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OQ401623.1__WED25043.1__CRP901_gp24__00024

Bact-Vir

OQ401623.1__WED25043.1__CRP901_gp24__00024

Identity

Accession:
OQ401623 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-901

TaxID: 3032256

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-81
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 45.0 4.19e-01 100.0% 57.3%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.64 40.0 4.39e-01 98.8% 81.0%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 36.0 3.63e-01 95.0% 59.0%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.59 41.0 3.57e-01 96.2% 48.4%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 37.0 3.43e-01 100.0% 49.1%
1wfmA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 39.0 3.31e-01 100.0% 41.3%
4brvA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.56 38.0 3.37e-01 100.0% 46.0%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 37.0 3.38e-01 98.8% 48.2%
5m59A06 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 39.0 3.49e-01 100.0% 52.7%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.54 40.0 3.35e-01 100.0% 43.0%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 37.0 3.14e-01 100.0% 40.1%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.81e-01 95.0% 92.7%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 36.0 3.36e-01 98.8% 56.6%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.52 43.0 4.32e-01 95.0% 97.6%
2enqA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 43.0 3.50e-01 97.5% 96.2%
4o2tA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 42.0 3.37e-01 95.0% 59.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5055931 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 47.0 4.19e-01 100.0% 57.3%
4932870 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 39.0 3.90e-01 100.0% 67.5%
3707025 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 40.0 3.26e-01 98.8% 37.4%
3413120 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.55 49.0 3.60e-01 100.0% 57.2%
3797628 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 41.0 3.47e-01 98.8% 50.8%
3864210 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 46.0 2.81e-01 100.0% 14.6%
3224576 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.70e-01 97.5% 64.0%
5014950 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.35e-01 100.0% 44.5%
5059105 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.33e-01 98.8% 43.9%
3182983 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.52 47.0 2.97e-01 100.0% 25.8%
4942869 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.52 46.0 3.60e-01 100.0% 85.3%
3609230 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 44.0 3.68e-01 97.5% 97.9%
3484786 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 36.0 3.03e-01 98.8% 42.0%
3907934 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.67e-01 98.8% 63.6%
3733271 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 40.0 3.28e-01 100.0% 45.2%
5005662 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.38e-01 100.0% 47.1%
3247494 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.50 38.0 3.26e-01 97.5% 50.0%
3938953 11.1.1.835 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Irg-7 0.50 37.0 2.94e-01 95.0% 38.7%
3737793 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.50 45.0 3.45e-01 100.0% 51.7%
D2 high residues 83-173
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00119__D20-104