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OQ401624.1__WED25161.1__CRP902_gp65__00065

Bact-Vir

OQ401624.1__WED25161.1__CRP902_gp65__00065

Identity

Accession:
OQ401624 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-902

TaxID: 3032257

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 130-229
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.69 39.0 4.29e-01 81.0% 69.1%
3gn3A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 41.0 3.49e-01 81.0% 80.4%
3i0pA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.51 44.0 4.31e-01 96.0% 100.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4149653 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 37.0 3.20e-01 83.0% 49.1%
D2 medium residues 21-61_261-422
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.61 20.0 3.64e-01 85.7% 100.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3497398 395.1.1.0 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related 0.66 14.0 3.01e-01 88.7% 72.0%
3815772 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.61 24.0 1.65e-01 95.1% 10.3%
5019455 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 26.0 2.73e-01 87.2% 46.2%
3947849 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.51 24.0 3.47e-01 95.1% 98.9%
3914722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 18.0 2.87e-01 93.6% 82.7%
3943661 304.5.1.13 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.50 23.0 3.17e-01 74.9% 85.0%
D3 medium residues 62-124_423-500
PDB
Domain cluster: rep: JGI24723J26617_10000007_prodigal-single.1__X__X__00027__D13-146
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18814.7 best PBECR5 25.2 1.80e-05 51.8% 30.2%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lndA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 34.0 3.75e-01 91.5% 71.4%
3agkA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.56 31.0 3.69e-01 90.1% 80.6%
3obyA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.55 31.0 3.67e-01 83.7% 78.8%
5gizA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 37.0 3.91e-01 92.2% 75.2%
2o1mA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 29.0 3.08e-01 85.1% 57.9%
5cvcA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 33.0 3.83e-01 81.6% 94.8%
5i7wA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 36.0 3.98e-01 85.1% 92.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3305892 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.64 32.0 3.02e-01 84.4% 38.8%
3622456 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.62 31.0 3.47e-01 81.6% 60.0%
3516781 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.61 35.0 3.72e-01 81.6% 62.3%
3972628 4262.1.1.0 ↗ a/b three-layered sandwiches › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like › CobE/CbiG C-terminal domain-like 0.56 35.0 4.06e-01 91.5% 87.0%
3386764 2007.1.14.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.56 39.0 4.30e-01 90.1% 88.7%
3427982 2006.1.1.52 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PF28688 0.53 36.0 3.54e-01 92.2% 64.7%
3282481 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 30.0 3.38e-01 86.5% 71.8%
3804470 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 30.0 2.89e-01 98.6% 47.6%
3797736 2003.4.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes 0.51 38.0 3.64e-01 85.1% 66.1%