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OQ411014.1__WEM33520.1__EJP02_459__00459
Bact-VirOQ411014.1__WEM33520.1__EJP02_459__00459
Identity
- Accession:
- OQ411014 ↗
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Taxonomy
TaxID: 3028122
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 35-99
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 48.0 | 4.11e-01 | 78.5% | 84.4% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 49.0 | 4.08e-01 | 78.5% | 81.1% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 49.0 | 4.06e-01 | 80.0% | 83.8% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 47.0 | 3.98e-01 | 83.1% | 49.6% |
| 3ezxA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.58 | 46.0 | 4.27e-01 | 90.8% | 89.5% |
| 2b6cA02 | 1.25.40.290 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains | 0.56 | 47.0 | 4.24e-01 | 100.0% | 92.8% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 41.0 | 3.89e-01 | 80.0% | 69.6% |
| 1u0jA01 | 1.10.10.950 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 38.0 | 4.03e-01 | 72.3% | 87.3% |
| 1ye9A03 | 1.10.10.1060 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Catalase HPII, helical domain | 0.54 | 38.0 | 4.07e-01 | 81.5% | 86.0% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.53 | 45.0 | 3.48e-01 | 100.0% | 79.5% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.53 | 40.0 | 3.38e-01 | 87.7% | 57.1% |
| 4bthA00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.52 | 40.0 | 3.09e-01 | 87.7% | 59.8% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.64e-01 | 95.4% | 96.2% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.51 | 34.0 | 3.44e-01 | 70.8% | 68.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3450807 | 109.4.1.1262 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long | 0.70 | 56.0 | 3.53e-01 | 87.7% | 16.8% |
| 4523817 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.62 | 45.0 | 3.29e-01 | 78.5% | 88.7% |
| 3998193 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 4.18e-01 | 96.9% | 69.1% |
| 5022337 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 48.0 | 4.25e-01 | 100.0% | 69.0% |
| 4990692 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.56 | 41.0 | 3.14e-01 | 80.0% | 95.0% |
| 5017280 | 2002.1.1.172 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C | 0.55 | 48.0 | 3.13e-01 | 98.5% | 65.9% |
| 4186195 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.54 | 39.0 | 2.77e-01 | 76.9% | 58.1% |
| 3234486 | 3966.1.1.1 ↗ | a+b complex topology › Mitoribosomal protein mS22 › Mitoribosomal protein mS22 › Mitoribosomal protein mS22 › MRP-S22 | 0.51 | 41.0 | 2.82e-01 | 100.0% | 28.8% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.50 | 35.0 | 3.14e-01 | 76.9% | 99.0% |
| 4026213 | 632.3.1.10 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › ACDC | 0.50 | 38.0 | 3.40e-01 | 83.1% | 74.7% |