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OQ414635.1__WDQ27535.1__EXVC032PBaldr_014__00014

Bact-Vir

OQ414635.1__WDQ27535.1__EXVC032PBaldr_014__00014

Identity

Accession:
OQ414635 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_EXVC031P_Hodr

TaxID: 3029570

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.78 60.0 5.18e-01 82.5% 61.6%
2d7lA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.76 57.0 5.88e-01 80.7% 100.0%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.76 56.0 5.80e-01 80.7% 98.1%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.74 55.0 4.93e-01 82.5% 66.3%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.71 53.0 5.21e-01 80.7% 83.6%
1v63A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.71 56.0 4.65e-01 87.7% 50.5%
2h09A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.68 51.0 5.17e-01 86.0% 83.9%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.67 50.0 4.90e-01 98.2% 74.6%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.66 47.0 4.35e-01 80.7% 59.5%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.65 50.0 4.56e-01 86.0% 65.8%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.64 46.0 4.13e-01 77.2% 70.4%
3hruB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.22e-01 100.0% 84.8%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 44.0 3.93e-01 75.4% 60.2%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.61 48.0 4.68e-01 94.7% 96.9%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 46.0 3.78e-01 89.5% 62.5%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.57e-01 86.0% 47.4%
5z9sB01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.57 39.0 2.46e-01 73.7% 43.9%
1n71B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.35e-01 98.2% 42.5%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.35e-01 93.0% 93.1%
3c2bA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 40.0 3.07e-01 82.5% 63.3%
1ltmA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 45.0 3.32e-01 100.0% 74.0%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.51 44.0 3.26e-01 93.0% 74.3%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 43.0 2.94e-01 94.7% 26.1%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 39.0 3.12e-01 94.7% 74.0%
2j4jF00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.50 42.0 2.92e-01 100.0% 90.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3633868 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.79 64.0 6.02e-01 87.7% 73.9%
3893243 190.1.1.9 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 0.75 58.0 5.89e-01 82.5% 96.4%
3605980 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.75 57.0 5.12e-01 82.5% 65.0%
2427 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.75 56.0 4.88e-01 82.5% 58.9%
3597182 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.75 57.0 5.09e-01 82.5% 63.7%
3627090 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.74 61.0 5.71e-01 91.2% 80.0%
3781276 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.74 63.0 6.05e-01 100.0% 84.6%
3592281 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.74 57.0 5.52e-01 86.0% 81.5%
None — 0.72 53.0 5.44e-01 80.7% 94.5%
3705118 190.1.1.24 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › PF31142 0.71 57.0 5.70e-01 91.2% 93.3%
4169648 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.70 55.0 5.34e-01 87.7% 83.1%
3712152 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 55.0 5.58e-01 86.0% 94.5%
3410150 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.70 55.0 5.60e-01 89.5% 92.7%
3998355 190.1.1.25 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 0.68 54.0 5.06e-01 87.7% 92.9%
3864894 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.68 53.0 4.69e-01 86.0% 60.0%
1663170 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.68 51.0 5.17e-01 86.0% 83.9%
3391114 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.68 55.0 5.28e-01 89.5% 83.1%
3506838 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.67 54.0 4.65e-01 91.2% 90.5%
1108268 3770.1.1.1 ↗ alpha arrays › Flax-rust effector AvrM › Flax-rust effector AvrM › Flax-rust effector AvrM › AvrM-A 0.67 50.0 3.78e-01 80.7% 46.4%
3788827 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.67 53.0 5.08e-01 87.7% 87.7%
3784781 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.66 54.0 4.99e-01 93.0% 74.7%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.66 51.0 4.55e-01 86.0% 63.9%
4453675 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.65 51.0 4.96e-01 87.7% 81.5%
3473995 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 46.0 4.48e-01 86.0% 67.7%
3620454 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 50.0 3.76e-01 86.0% 34.7%
3466473 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 50.0 4.26e-01 86.0% 52.6%
3605979 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.64 51.0 4.97e-01 91.2% 81.5%
3821270 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.64 49.0 4.28e-01 86.0% 57.8%
3781940 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.64 53.0 4.46e-01 94.7% 58.0%
4928573 183.1.1.5 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repress 0.63 55.0 4.44e-01 100.0% 99.1%
3699870 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.63 50.0 5.08e-01 89.5% 96.4%
5001480 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.62 52.0 4.03e-01 98.2% 94.3%
3720888 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 47.0 4.36e-01 86.0% 68.0%
4591229 190.1.1.8 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.60 48.0 4.17e-01 96.5% 55.8%
3174828 103.4.1.15 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28865 0.60 47.0 4.31e-01 89.5% 73.8%
3592719 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.59 44.0 3.13e-01 84.2% 44.6%
3431353 1128.1.1.10 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C 0.58 49.0 4.59e-01 94.7% 75.7%
3254545 103.11.1.0 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related 0.58 40.0 4.10e-01 78.9% 76.4%
3249906 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.55 45.0 4.01e-01 93.0% 84.7%
3934162 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 39.0 3.38e-01 82.5% 81.0%
4259065 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.52 41.0 3.91e-01 98.2% 88.0%
4949396 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.52 39.0 3.48e-01 96.5% 53.3%
4930612 4009.1.1.4 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › DUF3243 0.51 43.0 3.84e-01 93.0% 66.3%