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OQ414636.1__WDQ27620.1__EXVC031PHodr_039__00039
Bact-VirOQ414636.1__WDQ27620.1__EXVC031PHodr_039__00039
Identity
- Accession:
- OQ414636 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 3029571
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-186
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16793.11 best | RepB_primase | 38.8 | 1.30e-09 | 69.1% | 51.6% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.76 | 71.0 | 6.00e-01 | 100.0% | 92.9% |
| 3ephA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.51 | 17.0 | 2.80e-01 | 80.9% | 87.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2721360 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.85 | 82.0 | 8.12e-01 | 100.0% | 96.2% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.84 | 77.0 | 7.38e-01 | 95.5% | 93.0% |
| 185296 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.83 | 78.0 | 7.47e-01 | 99.4% | 86.9% |
| 4441734 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.82 | 77.0 | 7.61e-01 | 97.8% | 100.0% |
| 3602638 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 77.0 | 5.76e-01 | 100.0% | 56.2% |
| 4394681 | 862.1.1.4 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase | 0.80 | 76.0 | 7.18e-01 | 98.9% | 91.7% |
| 4994656 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.80 | 71.0 | 6.10e-01 | 92.1% | 85.4% |
| 4973338 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.80 | 70.0 | 5.90e-01 | 92.1% | 87.4% |
| 5027070 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.76 | 60.0 | 5.74e-01 | 81.5% | 90.2% |
| 5066297 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.74 | 70.0 | 5.94e-01 | 100.0% | 91.3% |
| 5050906 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.71 | 66.0 | 5.42e-01 | 100.0% | 92.1% |
| 4031372 | 862.1.1.12 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › PF29905 | 0.69 | 62.0 | 5.96e-01 | 95.5% | 94.5% |
| 3587269 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.68 | 62.0 | 6.02e-01 | 96.1% | 100.0% |
D2
medium
residues 193-279
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.79 | 55.0 | 5.45e-01 | 72.4% | 82.6% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.71 | 55.0 | 4.71e-01 | 82.8% | 96.5% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.70 | 48.0 | 5.22e-01 | 71.3% | 94.4% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.70 | 56.0 | 5.62e-01 | 87.4% | 98.9% |
| 4a64A01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.69 | 52.0 | 4.55e-01 | 80.5% | 84.1% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.64 | 52.0 | 4.03e-01 | 88.5% | 64.8% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.63 | 48.0 | 4.67e-01 | 82.8% | 99.0% |
| 5um2A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 41.0 | 3.41e-01 | 71.3% | 87.5% |
| 3qqwC01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.59 | 44.0 | 3.19e-01 | 87.4% | 26.6% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 38.0 | 3.59e-01 | 73.6% | 53.8% |
| 8fnyA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 45.0 | 3.47e-01 | 83.9% | 38.8% |
| 4ui9P01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 3.10e-01 | 87.4% | 25.9% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 3.75e-01 | 89.7% | 58.9% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 35.0 | 3.94e-01 | 70.1% | 88.5% |
| 1kn1B00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.54 | 38.0 | 3.20e-01 | 73.6% | 54.0% |
| 2vqgA00 | 1.10.10.1280 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C | 0.54 | 39.0 | 4.18e-01 | 94.3% | 88.2% |
| 6sj3B01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 45.0 | 3.10e-01 | 93.1% | 98.8% |
| 4j8dD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 42.0 | 3.49e-01 | 87.4% | 56.2% |
| 4hyqA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 45.0 | 3.38e-01 | 97.7% | 83.5% |
| 3qwwA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 41.0 | 3.27e-01 | 86.2% | 41.9% |
| 1ohcA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 45.0 | 3.73e-01 | 100.0% | 51.5% |
| 3o3mB01 | 1.20.1270.370 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 39.0 | 3.70e-01 | 82.8% | 99.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5064030 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.82 | 63.0 | 6.12e-01 | 80.5% | 80.0% |
| 5058298 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.82 | 64.0 | 5.68e-01 | 81.6% | 66.1% |
| 5030284 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.81 | 63.0 | 5.61e-01 | 81.6% | 63.3% |
| 5054621 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.80 | 62.0 | 5.44e-01 | 81.6% | 60.8% |
| 5081313 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.77 | 60.0 | 5.97e-01 | 82.8% | 78.9% |
| 3586830 | 182.1.3.2 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › PriCT_1 | 0.77 | 64.0 | 5.73e-01 | 87.4% | 71.3% |
| 4973692 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.75 | 58.0 | 5.54e-01 | 81.6% | 80.0% |
| 4942022 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.74 | 62.0 | 5.50e-01 | 88.5% | 67.5% |
| 4177876 | 182.1.3.0 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX | 0.73 | 60.0 | 5.61e-01 | 88.5% | 76.2% |
| 185297 | 6035.1.1.2 ↗ | alpha bundles › Primase helical domain › Primase helical domain › Primase helical domain › RepB_primase_C | 0.70 | 56.0 | 5.62e-01 | 87.4% | 98.9% |
| 4984330 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.69 | 53.0 | 5.28e-01 | 81.6% | 87.8% |
| 3986130 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.68 | 49.0 | 3.31e-01 | 74.7% | 23.5% |
| 3228741 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 54.0 | 4.34e-01 | 87.4% | 45.3% |
| 3376834 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.64 | 50.0 | 3.95e-01 | 83.9% | 50.5% |
| 4949477 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.64 | 50.0 | 4.06e-01 | 86.2% | 52.9% |
| 3780254 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 50.0 | 3.72e-01 | 87.4% | 64.9% |
| 3602991 | 109.4.1.190 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 | 0.61 | 49.0 | 4.04e-01 | 88.5% | 48.5% |
| 169903 | 109.4.1.1691 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_17, TPR_19 | 0.60 | 46.0 | 4.58e-01 | 86.2% | 80.2% |
| 3338724 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 48.0 | 4.12e-01 | 88.5% | 88.6% |
| 3840409 | 109.4.1.571 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Pex26 | 0.59 | 48.0 | 3.49e-01 | 88.5% | 33.5% |
| 4121455 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 45.0 | 3.20e-01 | 87.4% | 32.3% |
| 3742236 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 44.0 | 3.21e-01 | 87.4% | 32.7% |
| 5040720 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 45.0 | 3.20e-01 | 93.1% | 90.5% |
| 3599828 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 43.0 | 2.91e-01 | 89.7% | 23.9% |
| 3717642 | 109.4.1.1204 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3336 | 0.53 | 40.0 | 3.67e-01 | 81.6% | 79.1% |
| 3708428 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 3.35e-01 | 89.7% | 52.1% |
| 3550768 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 40.0 | 2.37e-01 | 88.5% | 9.3% |
| 3628088 | 574.1.1.2 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp,PRP21_like_P | 0.51 | 39.0 | 3.35e-01 | 98.9% | 50.3% |
| 4528537 | 109.4.1.146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_load | 0.51 | 39.0 | 3.68e-01 | 86.2% | 69.6% |
| 3315457 | 109.4.1.1666 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10 | 0.51 | 40.0 | 3.36e-01 | 92.0% | 85.7% |