Back to structures

OQ417964.1__WJJ55663.1__PROPHIT481_42__00042

Bact-Vir

OQ417964.1__WJJ55663.1__PROPHIT481_42__00042

Identity

Accession:
OQ417964 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 123-186
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09954.15 best DUF2188 74.8 6.40e-21 98.4% 96.8%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o16B00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.71 43.0 3.40e-01 100.0% 28.9%
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.69 62.0 3.79e-01 100.0% 21.5%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.69 41.0 3.66e-01 96.9% 41.8%
4hg0A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.69 43.0 3.28e-01 100.0% 27.2%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 43.0 3.30e-01 100.0% 28.0%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.68 60.0 4.90e-01 100.0% 95.0%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 42.0 3.29e-01 100.0% 29.4%
2j9lF01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.68 41.0 3.94e-01 98.4% 52.1%
2yziB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.68 42.0 3.26e-01 100.0% 29.6%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.68 53.0 5.21e-01 87.5% 93.0%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 51.0 4.57e-01 81.2% 95.5%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 41.0 3.41e-01 100.0% 33.6%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 41.0 3.31e-01 100.0% 30.8%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 41.0 3.27e-01 100.0% 29.4%
2yzqA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 41.0 3.56e-01 100.0% 40.4%
3kpbA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 41.0 3.36e-01 100.0% 33.6%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.65 40.0 3.36e-01 100.0% 35.4%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.65 57.0 4.65e-01 100.0% 73.8%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 42.0 3.36e-01 100.0% 34.1%
6h1wA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 40.0 3.31e-01 100.0% 34.2%
2ouxA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 40.0 3.21e-01 100.0% 31.0%
3kh5A02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 40.0 3.16e-01 100.0% 29.4%
6xwlE02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 39.0 3.11e-01 100.0% 29.2%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 39.0 3.11e-01 100.0% 29.4%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.63 56.0 4.70e-01 98.4% 73.6%
2ef7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 39.0 3.15e-01 100.0% 31.0%
3kh5A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 40.0 3.09e-01 100.0% 28.9%
2rihA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 40.0 3.23e-01 100.0% 32.1%
1vr9A02 3.10.20.750 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 38.0 4.06e-01 98.4% 69.6%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 39.0 3.04e-01 100.0% 27.4%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 40.0 3.15e-01 100.0% 29.2%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 52.0 3.86e-01 96.9% 69.3%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 38.0 3.30e-01 100.0% 37.4%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 38.0 3.14e-01 100.0% 31.7%
1dt9A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.62 52.0 4.44e-01 100.0% 71.4%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 45.0 2.95e-01 100.0% 16.6%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 39.0 3.14e-01 100.0% 32.3%
3l2bA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 38.0 3.20e-01 100.0% 34.2%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 38.0 2.99e-01 100.0% 28.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 41.0 3.75e-01 100.0% 51.6%
3r9pB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 48.0 3.64e-01 98.4% 66.1%
4ftfA00 3.30.300.250 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.57 46.0 3.95e-01 100.0% 54.1%
1b7yB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 44.0 3.19e-01 87.5% 63.9%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.55 42.0 3.18e-01 89.1% 89.5%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 49.0 2.91e-01 100.0% 30.5%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.65e-01 98.4% 94.3%
2dv6A01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 44.0 3.82e-01 100.0% 66.4%
3w7tA03 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 37.0 2.31e-01 78.1% 28.2%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 40.0 3.21e-01 89.1% 62.5%
4i9xA00 2.60.40.3790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.28e-01 100.0% 42.2%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 41.0 3.72e-01 92.2% 86.5%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 43.0 3.96e-01 100.0% 87.5%
2wteA01 3.40.50.11700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.45e-01 100.0% 94.9%
3fk9A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 38.0 3.02e-01 85.9% 58.8%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.50 42.0 3.98e-01 100.0% 93.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078398 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 43.0 3.32e-01 100.0% 26.7%
3253883 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.70 43.0 3.21e-01 100.0% 24.2%
4980356 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 43.0 3.42e-01 100.0% 30.8%
3971143 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 43.0 3.14e-01 100.0% 23.5%
3264654 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.69 43.0 3.13e-01 100.0% 22.9%
3651195 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 42.0 4.04e-01 100.0% 53.3%
4133743 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 42.0 3.10e-01 100.0% 23.5%
4400393 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.68 42.0 3.38e-01 100.0% 32.5%
5068759 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 42.0 3.20e-01 100.0% 26.7%
5058725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 58.0 4.72e-01 98.4% 73.6%
3254508 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 41.0 3.23e-01 100.0% 28.6%
5057336 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 41.0 3.30e-01 100.0% 31.0%
7290 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 41.0 3.29e-01 100.0% 30.3%
3386888 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.46e-01 100.0% 38.1%
4990414 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.21e-01 100.0% 27.6%
4990125 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.18e-01 100.0% 28.6%
4971482 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.66 58.0 4.49e-01 98.4% 57.1%
5042830 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.20e-01 100.0% 29.6%
2577268 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.32e-01 100.0% 32.5%
4956066 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.23e-01 100.0% 29.6%
5082776 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 41.0 3.26e-01 100.0% 30.8%
4961086 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 40.0 3.01e-01 100.0% 24.4%
5059208 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 41.0 3.06e-01 100.0% 24.4%
1087109 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 40.0 4.26e-01 100.0% 71.4%
5083459 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 40.0 3.17e-01 100.0% 29.6%
3221700 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.65 53.0 4.09e-01 95.3% 61.3%
4994427 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.25e-01 100.0% 30.8%
5035574 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.20e-01 100.0% 30.8%
4999043 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.17e-01 100.0% 28.6%
5038210 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 2.99e-01 100.0% 25.0%
4933559 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.64 40.0 3.30e-01 100.0% 34.8%
3913819 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 3.06e-01 100.0% 27.6%
4954502 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 3.24e-01 100.0% 33.3%
5016418 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 3.00e-01 100.0% 25.3%
5080691 244.4.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.63 54.0 4.64e-01 100.0% 88.9%
4139085 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 39.0 3.23e-01 100.0% 33.3%
3213706 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 53.0 3.76e-01 98.4% 46.4%
174462 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.62 44.0 2.90e-01 100.0% 16.1%
4994596 327.13.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.59 46.0 4.11e-01 100.0% 58.5%
4989148 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.58 48.0 3.94e-01 100.0% 85.9%
3245311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 50.0 4.30e-01 100.0% 83.8%
4211146 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.57 47.0 2.93e-01 92.2% 61.5%
4982365 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.56 47.0 3.91e-01 100.0% 64.0%
3499164 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 44.0 2.87e-01 90.6% 74.5%
5065351 2484.1.1.333 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 0.55 45.0 3.38e-01 98.4% 57.8%
1169925 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 38.0 3.12e-01 100.0% 38.1%
4485138 1.1.2.6 beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.54 47.0 3.82e-01 100.0% 90.4%
3744295 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 40.0 2.55e-01 81.2% 44.9%
3184189 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 44.0 2.76e-01 96.9% 51.2%
4013454 2003.6.1.0 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.53 43.0 2.72e-01 96.9% 51.1%
3270371 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 45.0 2.90e-01 100.0% 20.3%
4598878 7582.1.1.2 a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.52 46.0 3.40e-01 100.0% 61.2%
3649047 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 44.0 2.76e-01 100.0% 18.5%
5057784 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 43.0 3.78e-01 92.2% 97.9%
3312089 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 38.0 3.30e-01 87.5% 51.0%
3980839 2008.1.1.77 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.51 39.0 2.97e-01 100.0% 34.6%
4185103 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.51 35.0 3.61e-01 73.4% 93.3%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.51 40.0 3.31e-01 87.5% 87.5%