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OQ417966.1__WJJ55905.1__PROPHIT361_101__00101

Bact-Vir

OQ417966.1__WJJ55905.1__PROPHIT361_101__00101

Identity

Accession:
OQ417966 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-167
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.83 61.0 6.77e-01 80.8% 94.2%
2khqA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.79 55.0 6.15e-01 80.0% 91.2%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 43.0 4.88e-01 73.8% 90.7%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.62 36.0 3.55e-01 82.3% 53.3%
1t9xA05 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.59 47.0 3.99e-01 86.9% 75.7%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 39.0 4.38e-01 70.0% 98.9%
2gz4A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 45.0 3.96e-01 86.9% 66.5%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.56 42.0 3.72e-01 78.5% 83.9%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 42.0 3.79e-01 80.0% 80.4%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 44.0 3.92e-01 86.2% 76.4%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.55 49.0 4.04e-01 99.2% 57.6%
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.55 40.0 4.01e-01 76.9% 76.0%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 37.0 3.88e-01 89.2% 74.0%
2of3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 37.0 3.02e-01 97.7% 34.6%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 46.0 3.78e-01 100.0% 55.8%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.85e-01 96.9% 76.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4385779 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 63.0 6.56e-01 85.4% 88.3%
4212646 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.75 70.0 6.63e-01 100.0% 90.0%
5061202 186.1.1.3 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.75 63.0 6.31e-01 87.7% 90.8%
4150329 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.60 38.0 3.68e-01 73.8% 55.2%
3419702 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.58 43.0 4.11e-01 77.7% 97.4%
4895331 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.56 38.0 4.40e-01 87.7% 100.0%
4618209 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 3.47e-01 89.2% 72.5%
4999807 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.51 39.0 3.48e-01 82.3% 93.3%
5051427 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.50 42.0 3.61e-01 96.2% 99.1%
D2 medium residues 181-199_427-469
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 51.0 4.84e-01 82.3% 84.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4133358 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 53.0 3.93e-01 87.1% 32.3%
3976869 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.40e-01 83.9% 85.0%
4603338 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.69 47.0 4.59e-01 95.2% 64.3%
4169757 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.66 48.0 4.81e-01 82.3% 75.4%
D3 medium residues 200-288
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 46.0 4.29e-01 73.0% 94.8%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.64 43.0 3.74e-01 70.8% 80.4%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.62 31.0 3.52e-01 100.0% 61.2%
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 39.0 3.55e-01 71.9% 87.0%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.29e-01 83.1% 75.5%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 41.0 3.08e-01 84.3% 78.9%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 40.0 3.90e-01 86.5% 72.2%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 39.0 3.99e-01 100.0% 82.4%
1wvtA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.53 45.0 3.83e-01 94.4% 83.1%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 37.0 3.25e-01 97.8% 50.8%
3s0aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 46.0 4.24e-01 100.0% 96.6%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.52 41.0 3.63e-01 83.1% 93.0%
6z74C02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.51 44.0 3.71e-01 100.0% 83.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 37.0 3.60e-01 79.8% 93.1%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 40.0 4.04e-01 98.9% 87.1%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 40.0 3.50e-01 91.0% 87.1%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.50 35.0 3.72e-01 94.4% 84.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927047 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.65 32.0 3.53e-01 74.2% 57.3%
3570870 6140.1.1.3 alpha superhelices › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Cdc45-Binding Domain in Sld3/Treslin › Treslin_STD 0.59 39.0 3.16e-01 100.0% 34.3%
3250372 130.1.2.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.59 51.0 4.23e-01 100.0% 99.4%
3501332 189.1.1.0 alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP 0.59 43.0 3.18e-01 100.0% 28.6%
3486625 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 3.31e-01 82.0% 78.5%
3016249 532.2.1.0 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.53 38.0 3.74e-01 76.4% 94.9%
4103300 3754.1.1.1 alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 0.52 39.0 2.70e-01 78.7% 76.6%
3490452 3651.1.1.0 alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.52 41.0 3.44e-01 86.5% 70.6%
3814473 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.52 38.0 3.23e-01 79.8% 76.4%
3731168 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 39.0 3.71e-01 79.8% 99.0%
3432132 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.51 38.0 3.17e-01 79.8% 61.2%
3496205 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.51 45.0 3.15e-01 100.0% 84.2%
3286939 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.51 38.0 3.00e-01 79.8% 89.5%
3803559 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.50 38.0 3.15e-01 79.8% 70.0%
3588055 5049.1.1.1 alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp 0.50 34.0 2.26e-01 70.8% 58.4%
D4 medium residues 289-426
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 58.0 5.37e-01 100.0% 63.6%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.71 49.0 5.11e-01 100.0% 76.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 25.0 3.60e-01 75.4% 80.3%
4am6A02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 34.0 3.32e-01 91.3% 60.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4933965 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 58.0 6.10e-01 95.7% 84.8%
3839627 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 59.0 6.05e-01 100.0% 81.5%
4932090 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 59.0 6.20e-01 97.8% 87.2%
5057283 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 59.0 5.96e-01 97.8% 80.0%
5030401 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 59.0 6.02e-01 97.8% 81.5%
5072041 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 56.0 5.77e-01 97.8% 80.0%
4929009 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 58.0 5.96e-01 100.0% 83.8%
4979786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 53.0 5.64e-01 97.8% 83.3%
5054951 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 56.0 5.79e-01 97.8% 82.3%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 59.0 6.07e-01 97.8% 87.7%
3839222 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 58.0 5.79e-01 100.0% 81.4%
4940128 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 56.0 5.91e-01 97.1% 89.6%
4101478 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 60.0 5.93e-01 100.0% 84.8%
3926774 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.70 58.0 5.80e-01 99.3% 86.4%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 57.0 5.13e-01 100.0% 65.3%
4964439 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 62.0 5.30e-01 97.8% 64.7%
4928148 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.65 48.0 4.48e-01 98.6% 62.5%
3942380 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.61 55.0 5.15e-01 98.6% 80.4%
4393385 1032.1.1.1 alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore 0.57 47.0 4.30e-01 88.4% 66.7%
3389668 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.54 37.0 4.27e-01 71.0% 97.0%
D5 medium residues 496-635
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 34.0 4.49e-01 92.1% 96.2%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.57 39.0 3.40e-01 70.7% 83.6%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 31.0 3.53e-01 88.6% 73.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.54 26.0 3.14e-01 77.9% 68.2%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 24.0 3.31e-01 92.9% 86.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2330449 150.3.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.68 34.0 3.59e-01 88.6% 52.0%
3991595 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 32.0 3.80e-01 90.0% 72.6%
3692148 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.58 43.0 4.20e-01 75.7% 97.3%
4938393 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.56 32.0 3.34e-01 78.6% 59.2%
3723732 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 42.0 3.80e-01 80.0% 87.5%
3970202 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.54 32.0 3.66e-01 98.6% 79.0%
3170792 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.53 39.0 2.75e-01 75.7% 26.7%