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OQ417966.1__WJJ55906.1__PROPHIT361_102__00102

Bact-Vir

OQ417966.1__WJJ55906.1__PROPHIT361_102__00102

Identity

Accession:
OQ417966 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_phage_prophiT36-1

TaxID: 3032451

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 208-244_469-646
PDB
Domain cluster: rep: IMGVR_UViG_3300009506_002638-3300009506-Ga0118657_1006709312__D23-176
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 61.0 6.77e-01 100.0% 97.7%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 63.0 6.61e-01 100.0% 94.3%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 45.0 5.24e-01 95.3% 81.1%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.71 63.0 6.23e-01 100.0% 88.7%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.69 39.0 4.91e-01 78.6% 91.3%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 59.0 6.05e-01 100.0% 93.4%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.67 55.0 5.45e-01 100.0% 81.5%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.66 55.0 5.26e-01 100.0% 76.3%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.66 40.0 4.79e-01 77.2% 86.7%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.63 36.0 4.68e-01 72.1% 100.0%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 27.0 3.56e-01 77.2% 78.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940211 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 61.0 6.80e-01 100.0% 97.1%
4475168 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 62.0 6.53e-01 100.0% 86.7%
4999495 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 57.0 6.28e-01 96.7% 87.2%
4580960 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 48.0 5.90e-01 79.5% 91.4%
5002702 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 60.0 6.39e-01 100.0% 86.8%
4004483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 60.0 6.43e-01 100.0% 87.9%
5000880 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 58.0 6.29e-01 100.0% 88.3%
4998701 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 59.0 6.43e-01 100.0% 92.2%
5027341 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 54.0 6.22e-01 97.7% 94.4%
5082761 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 47.0 6.03e-01 78.6% 100.0%
5016957 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 60.0 6.64e-01 100.0% 100.0%
3964227 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 44.0 5.63e-01 79.1% 95.4%
4453818 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 51.0 6.03e-01 86.0% 97.3%
5003452 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 46.0 5.82e-01 80.5% 100.0%
3839627 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 45.0 5.66e-01 80.0% 95.6%
3271483 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 62.0 6.59e-01 100.0% 97.4%
3839222 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 46.0 5.66e-01 80.5% 96.4%
3964657 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 57.0 6.01e-01 100.0% 88.7%
3965072 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 43.0 5.46e-01 80.0% 96.2%
5073434 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 58.0 6.02e-01 96.3% 88.0%
4101478 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 47.0 5.69e-01 80.0% 98.6%
3973159 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 45.0 5.31e-01 80.5% 90.7%
4964439 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 61.0 6.14e-01 100.0% 91.2%
4965169 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 62.0 6.30e-01 100.0% 95.7%
3251731 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.68 46.0 5.41e-01 80.5% 94.8%
4938177 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.67 44.0 5.31e-01 79.1% 97.9%
4954714 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 47.0 5.09e-01 81.4% 100.0%
3624122 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 32.0 3.46e-01 74.9% 72.2%
3626316 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 31.0 3.86e-01 96.7% 100.0%
D2 medium residues 47-195
PDB
Domain cluster: rep: BK061480.1__DBA08546.1__X__00074__D11-191
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nrwA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.82 55.0 6.52e-01 81.9% 97.1%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.76 48.0 5.57e-01 77.9% 85.6%
2kd1A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.76 51.0 5.72e-01 82.6% 86.4%
2kkpA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.74 49.0 5.48e-01 81.2% 85.5%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.68 46.0 5.15e-01 79.2% 87.3%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.57 39.0 3.91e-01 73.8% 68.0%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 35.0 3.75e-01 71.1% 70.6%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.55 33.0 3.96e-01 71.8% 90.5%
3fggA00 1.10.3950.10 Mainly Alpha › Orthogonal Bundle › putative ecf-type sigma factor negative effector from bacillus cereus › putative ecf-type sigma factor negative effector from bacillus cereus 0.54 35.0 3.54e-01 83.2% 63.9%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.54 41.0 4.22e-01 82.6% 85.6%
1cpcA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.51 39.0 3.86e-01 81.2% 75.3%
1hbgA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 40.0 4.04e-01 83.2% 91.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4362692 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.87 58.0 7.07e-01 77.9% 100.0%
4063794 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.87 59.0 6.85e-01 81.2% 92.7%
3504160 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.87 60.0 6.94e-01 81.9% 94.5%
4566550 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.84 56.0 6.78e-01 82.6% 100.0%
5080068 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.83 52.0 6.26e-01 83.2% 93.0%
5043403 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.82 52.0 6.26e-01 77.2% 94.0%
4465167 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 59.0 6.81e-01 81.9% 100.0%
4090274 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.81 55.0 6.53e-01 81.2% 99.0%
4964250 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.79 56.0 6.28e-01 85.2% 93.0%
4629318 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.77 51.0 6.03e-01 83.2% 95.2%
5055663 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.74 59.0 6.26e-01 91.3% 93.8%
4938272 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.56 36.0 3.90e-01 76.5% 75.2%
4941802 3352.1.1.2 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.52 43.0 3.19e-01 89.9% 84.4%
D3 medium residues 255-344
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3obwA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.55 38.0 3.72e-01 95.6% 63.7%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.53 39.0 3.67e-01 78.9% 63.6%
1ypxA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.52 45.0 3.16e-01 100.0% 98.7%
1a99A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 43.0 3.52e-01 94.4% 70.1%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665075 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.63 34.0 2.94e-01 74.4% 32.4%
5082846 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.54 37.0 2.88e-01 71.1% 79.0%
D4 medium residues 661-708
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3305205 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.54 45.0 3.15e-01 100.0% 47.4%