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OQ417970.1__WJJ56238.1__PROPHIT462_44__00044

Bact-Vir

OQ417970.1__WJJ56238.1__PROPHIT462_44__00044

Identity

Accession:
OQ417970 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bhcA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.68 40.0 3.29e-01 75.0% 32.5%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 53.0 4.48e-01 88.2% 53.2%
4n04A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 40.0 3.40e-01 86.8% 39.6%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.78e-01 82.4% 53.8%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.41e-01 100.0% 99.1%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 3.97e-01 88.2% 56.3%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.58 37.0 3.34e-01 73.5% 45.5%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.57 35.0 2.28e-01 73.5% 13.2%
5jmfA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 46.0 3.05e-01 88.2% 69.0%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.56 37.0 3.21e-01 73.5% 45.1%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 36.0 2.84e-01 79.4% 33.3%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.20e-01 85.3% 87.6%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.55 42.0 3.27e-01 88.2% 40.4%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.80e-01 82.4% 93.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.75e-01 88.2% 56.4%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 2.86e-01 91.2% 33.5%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.54 34.0 3.24e-01 77.9% 51.8%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.54 42.0 3.34e-01 88.2% 89.3%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.51e-01 88.2% 54.5%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 3.96e-01 89.7% 88.2%
6b9oA03 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.38e-01 73.5% 98.9%
4mt4A00 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 40.0 2.49e-01 85.3% 57.6%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.53 41.0 3.35e-01 85.3% 83.3%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 41.0 3.28e-01 89.7% 95.8%
1yawB01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.51 37.0 2.97e-01 77.9% 82.8%
4mb8D00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.51 42.0 2.83e-01 95.6% 42.4%
4it7A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.55e-01 89.7% 80.4%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724739 2485.1.1.34 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Rdx 0.71 54.0 4.61e-01 82.4% 91.8%
4091907 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.67 58.0 4.66e-01 97.1% 73.3%
3618586 11.1.1.621 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM131_2 0.66 53.0 4.24e-01 88.2% 92.6%
3490572 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 50.0 3.71e-01 86.8% 43.2%
3711252 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.64 46.0 3.60e-01 89.7% 36.4%
3365669 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.64 48.0 4.10e-01 88.2% 50.0%
2462280 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.64 51.0 3.76e-01 88.2% 42.3%
3830120 244.1.1.9 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.63 50.0 3.60e-01 88.2% 79.5%
3670778 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 46.0 4.26e-01 80.9% 62.2%
3725591 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 3.48e-01 73.5% 48.9%
4168202 101.17.1.0 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.61 42.0 3.82e-01 75.0% 52.7%
3784499 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.61 49.0 3.62e-01 88.2% 40.5%
None 0.60 48.0 2.97e-01 88.2% 24.5%
3740523 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.60 47.0 3.65e-01 88.2% 44.8%
4478491 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 48.0 4.23e-01 89.7% 58.1%
1886771 265.1.1.3 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat 0.59 43.0 3.61e-01 79.4% 59.1%
3591958 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.59 46.0 3.93e-01 86.8% 94.9%
3205533 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 51.0 4.40e-01 98.5% 86.4%
3810053 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 47.0 3.62e-01 88.2% 82.6%
3419536 247.1.1.13 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_4 0.59 41.0 2.91e-01 77.9% 23.3%
4000635 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.58 45.0 3.43e-01 88.2% 41.7%
4934107 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.57 46.0 3.55e-01 89.7% 43.9%
3192062 5.1.4.250 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF2415 0.56 43.0 2.71e-01 86.8% 28.0%
3824811 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.56 43.0 3.39e-01 85.3% 51.6%
4106395 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.56 41.0 3.47e-01 76.5% 51.8%
3628862 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 39.0 2.67e-01 89.7% 21.8%
4026029 77.3.1.3 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN 0.55 40.0 3.29e-01 76.5% 43.8%
4029641 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 43.0 2.79e-01 86.8% 31.8%
3735485 5.1.4.143 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF6454 0.55 49.0 3.14e-01 100.0% 74.2%
1892068 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.54 28.0 2.48e-01 82.4% 31.4%
3596152 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.59e-01 89.7% 88.6%
3458829 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.53 45.0 2.83e-01 100.0% 37.9%
3630101 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 42.0 2.60e-01 86.8% 20.7%
3490946 5.1.5.47 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › BCAS3_WD40 0.52 39.0 2.56e-01 86.8% 15.6%
3478269 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.52 36.0 3.86e-01 76.5% 83.3%
3276927 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.52 37.0 3.65e-01 76.5% 97.3%
4006664 11.1.1.10 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_N 0.50 39.0 3.06e-01 86.8% 72.3%
4529160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 43.0 3.81e-01 100.0% 75.2%
D2 high residues 72-166
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.65 42.0 4.49e-01 100.0% 75.0%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 40.0 3.87e-01 100.0% 56.7%
1lcsA00 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.59 53.0 4.16e-01 100.0% 94.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.59 46.0 4.91e-01 98.9% 95.2%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 38.0 3.57e-01 100.0% 52.0%
1cb9A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 33.0 4.14e-01 100.0% 95.0%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.56 39.0 2.97e-01 100.0% 29.8%
2mcfA00 3.40.50.11630 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 48.0 4.20e-01 100.0% 63.5%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 48.0 4.44e-01 100.0% 94.4%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 46.0 3.37e-01 98.9% 71.2%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 39.0 2.99e-01 77.9% 83.9%
2ya0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.51e-01 76.8% 89.1%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 40.0 3.42e-01 83.2% 97.5%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 36.0 2.91e-01 100.0% 36.0%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 37.0 3.46e-01 91.6% 60.8%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 38.0 3.28e-01 82.1% 97.0%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 35.0 3.50e-01 98.9% 68.7%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 39.0 3.44e-01 83.2% 68.6%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 44.0 3.74e-01 98.9% 64.6%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 39.0 3.54e-01 85.3% 71.6%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 38.0 3.52e-01 83.2% 66.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3407694 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.70 38.0 4.08e-01 100.0% 61.2%
3181782 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.64 41.0 3.88e-01 100.0% 55.5%
5028718 223.8.1.0 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.62 37.0 3.64e-01 100.0% 54.3%
3930134 390.1.1.1 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 0.61 33.0 3.33e-01 100.0% 50.5%
3848014 712.1.1.1 beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat 0.61 54.0 4.27e-01 100.0% 100.0%
3310182 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.59 47.0 4.68e-01 88.4% 92.0%
4048083 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.58 47.0 3.65e-01 88.4% 70.5%
4448377 11.1.1.203 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.57 34.0 3.38e-01 100.0% 54.0%
3462310 221.6.1.2 a+b two layers › beta-Grasp › MM3350-like › MM3350-like › SNAPC3 0.56 49.0 4.24e-01 100.0% 85.2%
4929169 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.48e-01 100.0% 57.0%
5068217 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.55 41.0 4.20e-01 97.9% 81.1%
3503921 11.1.1.187 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EFF-AFF 0.55 42.0 4.09e-01 82.1% 94.3%
1220968 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.54 40.0 3.64e-01 78.9% 88.0%
3767551 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.20e-01 88.4% 98.1%
4952202 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 34.0 3.16e-01 100.0% 49.6%
4355799 223.1.1.26 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.52 39.0 3.33e-01 82.1% 81.2%