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OQ417975.1__WJJ56671.1__PROPHIBWHA1_56__00056

Bact-Vir

OQ417975.1__WJJ56671.1__PROPHIBWHA1_56__00056

Identity

Accession:
OQ417975 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-49
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 36.0 2.78e-01 93.8% 20.8%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 48.0 3.83e-01 81.2% 81.1%
2lp7A00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 40.0 3.79e-01 75.0% 50.8%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.63 46.0 4.12e-01 91.7% 54.3%
2corA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.62 42.0 3.65e-01 85.4% 43.0%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.61 45.0 4.68e-01 85.4% 88.4%
7qb0A02 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.60 40.0 3.73e-01 70.8% 53.2%
2ecjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 42.0 3.98e-01 83.3% 63.8%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 42.0 2.96e-01 83.3% 26.4%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 48.0 3.41e-01 91.7% 45.7%
2dsmA00 3.30.40.30 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain 0.57 39.0 3.58e-01 77.1% 50.0%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 43.0 2.66e-01 87.5% 57.5%
5mmjb01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 45.0 3.26e-01 89.6% 66.7%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 42.0 3.86e-01 91.7% 83.3%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 40.0 3.87e-01 89.6% 95.0%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 3.84e-01 95.8% 77.6%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.52 43.0 3.77e-01 100.0% 80.0%
5ocrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 32.0 2.06e-01 97.9% 9.7%
1v6gA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.50 36.0 3.13e-01 79.2% 63.0%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.38e-01 93.8% 51.7%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 2.94e-01 100.0% 46.9%
6j7xA01 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.50 38.0 2.41e-01 87.5% 25.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4410490 3961.1.1.0 0.74 51.0 3.99e-01 85.4% 35.0%
3697191 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.72 46.0 5.21e-01 72.9% 91.4%
3304089 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 50.0 5.14e-01 79.2% 80.0%
3336883 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.69 47.0 4.87e-01 77.1% 77.8%
3511728 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.67 45.0 4.60e-01 72.9% 73.3%
3260001 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 45.0 4.81e-01 87.5% 85.0%
4940041 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 44.0 4.96e-01 72.9% 97.1%
3617313 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 44.0 4.89e-01 72.9% 97.1%
3252156 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 42.0 4.47e-01 77.1% 82.5%
3506036 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 41.0 4.57e-01 77.1% 91.4%
3928404 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 43.0 4.51e-01 77.1% 85.0%
3697192 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.63 41.0 3.74e-01 70.8% 49.2%
4014333 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.63 44.0 4.94e-01 81.2% 100.0%
3526962 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.63 41.0 4.57e-01 79.2% 94.3%
3883317 2485.1.1.44 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 0.62 51.0 3.75e-01 93.8% 97.8%
5030292 931.1.1.0 few secondary structure elements › Metallothionein › Metallothionein › Metallothionein 0.61 41.0 4.46e-01 72.9% 97.1%
3742454 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 40.0 4.43e-01 70.8% 94.3%
3544819 376.1.3.30 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C6_DPF 0.61 41.0 3.28e-01 77.1% 35.8%
3208684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 41.0 3.91e-01 72.9% 60.0%
5061512 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 42.0 4.40e-01 83.3% 92.5%
3529042 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.59 39.0 3.90e-01 70.8% 66.0%
3628874 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.59 39.0 4.27e-01 79.2% 97.1%
4224305 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.59 39.0 4.24e-01 77.1% 94.3%
3495690 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 43.0 4.14e-01 85.4% 100.0%
4849721 3016.1.1.6 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › DegT_DnrJ_EryC1 0.59 42.0 2.74e-01 77.1% 77.8%
3185618 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 47.0 2.79e-01 95.8% 75.9%
2886103 4246.1.1.0 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.57 47.0 3.08e-01 95.8% 70.7%
4990542 377.1.1.128 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 0.57 41.0 4.23e-01 85.4% 86.7%
3266061 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.56 41.0 4.40e-01 85.4% 95.0%
3546235 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 36.0 3.74e-01 70.8% 71.1%
3996684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.55 36.0 3.57e-01 70.8% 58.2%
3524547 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.55 42.0 4.01e-01 89.6% 95.0%
3435304 376.1.1.52 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.54 43.0 4.04e-01 97.9% 95.4%
5042171 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.54 45.0 3.39e-01 89.6% 50.0%
5067072 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 37.0 3.74e-01 77.1% 72.0%
3230542 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 37.0 3.87e-01 81.2% 92.5%
3946422 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 41.0 3.45e-01 89.6% 50.6%
4862375 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 39.0 2.38e-01 85.4% 46.9%
3927094 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 37.0 3.51e-01 89.6% 61.4%
D2 high residues 54-141
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 24.6 4.10e-05 93.2% 88.8%
PF13455.13 MUG113 32.8 1.20e-07 80.7% 93.2%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.65 56.0 5.50e-01 96.6% 87.5%
3bgyA00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.64 36.0 2.62e-01 95.5% 21.2%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 45.0 4.08e-01 93.2% 59.3%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.83e-01 96.6% 67.9%
1jykA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 39.0 2.94e-01 70.5% 71.6%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.57 43.0 4.39e-01 81.8% 98.9%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 38.0 3.74e-01 75.0% 97.8%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 42.0 3.94e-01 86.4% 75.9%
1konA02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.53 41.0 4.15e-01 83.0% 88.9%
1gaxA03 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.53 37.0 3.13e-01 73.9% 77.1%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.51 42.0 3.01e-01 93.2% 29.7%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.40e-01 80.7% 68.5%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3197583 821.1.1.10 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.73 65.0 4.97e-01 96.6% 77.7%
3698242 821.1.1.10 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.71 64.0 5.65e-01 96.6% 75.6%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.70 58.0 5.82e-01 94.3% 87.8%
4623707 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 59.0 5.76e-01 97.7% 87.4%
4397568 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.68 57.0 5.72e-01 96.6% 90.0%
3388590 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.67 39.0 4.55e-01 79.5% 83.3%
4997210 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.67 56.0 5.62e-01 95.5% 90.0%
3971569 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 56.0 5.72e-01 96.6% 95.3%
3942510 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.66 57.0 5.55e-01 97.7% 87.4%
4669741 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 55.0 5.44e-01 97.7% 86.3%
1003912 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 56.0 5.50e-01 96.6% 87.5%
3365225 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.64 50.0 4.55e-01 84.1% 80.0%
3666940 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.64 50.0 4.53e-01 84.1% 88.3%
4557537 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.64 54.0 5.38e-01 97.7% 91.1%
1395021 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.64 36.0 2.63e-01 95.5% 21.4%
3505268 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.58 47.0 4.16e-01 90.9% 98.5%
5057619 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.58 44.0 3.23e-01 81.8% 100.0%
3496578 11.1.1.884 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Metallopep 0.57 34.0 3.48e-01 95.5% 60.0%
3257812 376.1.1.19 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.54 26.0 3.08e-01 85.2% 65.5%
3421596 10.12.1.31 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.53 46.0 4.23e-01 97.7% 94.9%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.53 45.0 3.19e-01 98.9% 62.0%
5058227 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.51 46.0 3.86e-01 100.0% 74.0%