←Back to structures

OQ427096.1__WEM34345.1__X__00124

Bact-Vir

OQ427096.1__WEM34345.1__X__00124

Identity

Accession:
OQ427096 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_X1

TaxID: 2511832

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-58
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 65.0 6.77e-01 100.0% 92.5%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 62.0 5.42e-01 100.0% 55.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 62.0 6.28e-01 100.0% 84.2%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 60.0 5.81e-01 100.0% 76.2%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.68e-01 100.0% 78.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.54e-01 100.0% 78.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.65e-01 100.0% 77.4%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.27e-01 100.0% 73.8%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.50e-01 100.0% 74.7%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 43.0 4.22e-01 73.7% 59.7%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 47.0 4.39e-01 77.2% 91.8%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 5.30e-01 100.0% 93.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.42e-01 100.0% 90.6%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 55.0 5.23e-01 100.0% 89.6%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.62 42.0 4.43e-01 71.9% 90.2%
5u25A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.92e-01 100.0% 96.7%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 43.0 4.25e-01 94.7% 77.0%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.57 42.0 3.24e-01 84.2% 75.8%
2f4iA02 2.40.50.420 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Envelope glycoprotein gp160, DUF2291, alpha/beta domain 0.57 41.0 3.33e-01 78.9% 71.3%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 46.0 3.98e-01 94.7% 64.6%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.31e-01 93.0% 92.4%
2bkkA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 3.49e-01 80.7% 50.0%
5dudC02 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.55 46.0 3.58e-01 98.2% 77.4%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.22e-01 84.2% 91.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.80e-01 94.7% 72.1%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 45.0 3.58e-01 94.7% 79.8%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.53 34.0 3.46e-01 91.2% 65.5%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.52 40.0 3.44e-01 89.5% 85.4%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.57e-01 93.0% 95.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3348456 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.83 69.0 6.80e-01 100.0% 85.0%
3820064 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.83 61.0 5.44e-01 100.0% 56.2%
3598271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 63.0 4.39e-01 100.0% 27.6%
3581896 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.78 59.0 5.67e-01 100.0% 70.8%
3372822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.18e-01 100.0% 72.0%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 60.0 5.47e-01 100.0% 62.7%
3486326 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.12e-01 100.0% 85.5%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 59.0 5.55e-01 100.0% 67.1%
3933047 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.77 60.0 4.28e-01 100.0% 30.0%
3461921 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.76 67.0 5.51e-01 100.0% 55.0%
3703934 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.65e-01 100.0% 76.7%
3296864 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.75 54.0 5.32e-01 100.0% 71.7%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 59.0 5.87e-01 100.0% 81.7%
3365104 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.74 64.0 6.18e-01 100.0% 84.6%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.74 52.0 5.29e-01 100.0% 76.4%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 4.46e-01 100.0% 41.8%
3821920 4.1.1.283 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.73 56.0 5.67e-01 100.0% 85.5%
3494671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.21e-01 75.4% 86.7%
3543981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.69e-01 100.0% 81.5%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.64e-01 100.0% 74.7%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 57.0 5.11e-01 100.0% 63.7%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.84e-01 100.0% 86.7%
3427965 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.69 62.0 5.66e-01 100.0% 82.7%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.20e-01 100.0% 62.2%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.69 60.0 5.00e-01 100.0% 56.0%
3503981 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 51.0 5.08e-01 94.7% 76.7%
3698280 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 60.0 4.98e-01 100.0% 56.0%
4284598 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.68 60.0 5.14e-01 100.0% 62.2%
3933892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.75e-01 100.0% 88.3%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 59.0 5.78e-01 100.0% 88.9%
3891252 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 59.0 5.82e-01 100.0% 93.3%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 59.0 5.89e-01 100.0% 96.6%
3880677 2.1.1.251 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_HELZ2 0.65 44.0 3.87e-01 70.2% 75.3%
3693741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.34e-01 100.0% 89.9%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 57.0 5.00e-01 100.0% 67.1%
3878570 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.64 57.0 5.33e-01 100.0% 84.3%
3783847 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 56.0 5.45e-01 100.0% 87.7%
3236896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 5.23e-01 98.2% 80.0%
3931417 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 55.0 5.47e-01 100.0% 95.0%
3230400 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.32e-01 100.0% 92.3%
3475756 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 53.0 4.97e-01 100.0% 76.0%
3585016 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 44.0 4.37e-01 75.4% 93.3%
3892172 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 51.0 4.12e-01 100.0% 95.0%
3894023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.51e-01 98.2% 94.1%
4594253 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 48.0 4.57e-01 94.7% 90.0%
3657336 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.58 38.0 2.44e-01 89.5% 13.0%
5013598 75.1.1.2 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › CT_A_B 0.57 49.0 3.74e-01 100.0% 75.9%
3787155 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.55 44.0 3.11e-01 96.5% 62.7%
4991268 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 40.0 3.03e-01 87.7% 85.1%
3174210 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.52 38.0 2.50e-01 86.0% 69.8%
3964608 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.51 41.0 3.97e-01 96.5% 98.6%
5074446 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.51 34.0 2.47e-01 86.0% 21.2%