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OQ436456.1__WEU67268.1__X__00001
Bact-VirOQ436456.1__WEU67268.1__X__00001
Identity
- Accession:
- OQ436456 ↗
- Kingdom:
- phage
Quality
71.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-86
Domain cluster:
rep: MZ436628.1__QXN67995.1__X__00012__D18-122
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.75 | 56.0 | 4.24e-01 | 78.8% | 69.2% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.74 | 56.0 | 4.80e-01 | 81.2% | 97.1% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.73 | 56.0 | 4.47e-01 | 81.2% | 92.6% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.73 | 55.0 | 4.65e-01 | 81.2% | 83.1% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.72 | 56.0 | 4.93e-01 | 83.5% | 88.0% |
| 3fxdC00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.72 | 40.0 | 5.01e-01 | 77.6% | 94.0% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.71 | 54.0 | 4.30e-01 | 81.2% | 92.8% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.70 | 57.0 | 4.85e-01 | 87.1% | 82.7% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.69 | 51.0 | 5.27e-01 | 78.8% | 97.5% |
| 2nr4A02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.69 | 42.0 | 4.98e-01 | 76.5% | 89.7% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 39.0 | 4.74e-01 | 72.9% | 94.1% |
| 3rfyA02 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.66 | 49.0 | 4.61e-01 | 80.0% | 89.7% |
| 6adqG01 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.64 | 54.0 | 4.28e-01 | 94.1% | 89.9% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 50.0 | 4.32e-01 | 85.9% | 75.0% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.60 | 49.0 | 4.47e-01 | 94.1% | 95.0% |
| 4f03B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 37.0 | 3.10e-01 | 85.9% | 37.2% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.59 | 49.0 | 4.51e-01 | 94.1% | 90.2% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.59 | 48.0 | 4.17e-01 | 90.6% | 74.8% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.59 | 42.0 | 3.32e-01 | 75.3% | 91.0% |
| 2a9uA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 41.0 | 3.58e-01 | 81.2% | 50.0% |
| 2w53B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 43.0 | 3.48e-01 | 83.5% | 74.0% |
| 2dlaA01 | 1.20.930.50 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.56 | 42.0 | 3.46e-01 | 80.0% | 78.8% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 47.0 | 4.59e-01 | 95.3% | 100.0% |
| 6nmgA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 46.0 | 3.02e-01 | 92.9% | 41.1% |
| 5h9fB00 | 1.10.520.40 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 | 0.55 | 43.0 | 3.68e-01 | 89.4% | 49.0% |
| 3evyA00 | 1.20.58.910 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 4.13e-01 | 85.9% | 81.9% |
| 2kxpA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.52 | 35.0 | 3.34e-01 | 70.6% | 76.6% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 3.60e-01 | 100.0% | 76.8% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 35.0 | 3.45e-01 | 71.8% | 89.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3209611 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.72 | 47.0 | 5.42e-01 | 80.0% | 89.2% |
| 3375382 | 3832.1.1.2 ↗ | alpha bundles › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › Tumor necrosis factor alpha-induced protein 8-like protein 2 › PF25968 | 0.70 | 55.0 | 4.02e-01 | 83.5% | 46.7% |
| 3913790 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 53.0 | 4.83e-01 | 81.2% | 86.1% |
| 3268808 | 609.1.1.1 ↗ | alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg | 0.70 | 56.0 | 4.86e-01 | 88.2% | 65.9% |
| 3256631 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.68 | 55.0 | 4.92e-01 | 88.2% | 84.2% |
| 4872585 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.67 | 46.0 | 3.46e-01 | 70.6% | 46.4% |
| 5027758 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.65 | 48.0 | 3.89e-01 | 77.6% | 91.6% |
| 3675602 | 109.4.1.1686 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, HEAT_EZ | 0.64 | 55.0 | 3.37e-01 | 94.1% | 32.1% |
| 4616836 | 109.4.1.1881 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28745, PF28753, PF28771 | 0.64 | 52.0 | 3.15e-01 | 87.1% | 28.1% |
| 3729461 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 52.0 | 4.22e-01 | 88.2% | 92.5% |
| 3243563 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 40.0 | 3.15e-01 | 70.6% | 34.8% |
| 4025698 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 47.0 | 3.55e-01 | 84.7% | 54.2% |
| 3265360 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.58 | 44.0 | 3.57e-01 | 80.0% | 46.3% |
| 3344864 | 109.4.1.257 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 | 0.58 | 46.0 | 3.01e-01 | 87.1% | 29.5% |
| 3596054 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 45.0 | 3.04e-01 | 85.9% | 28.2% |
| 3612915 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 43.0 | 4.06e-01 | 82.4% | 83.8% |
| 4228028 | 109.4.1.39 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › V-ATPase_H_N | 0.55 | 42.0 | 2.88e-01 | 83.5% | 28.9% |
| 3876902 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 44.0 | 3.29e-01 | 88.2% | 49.3% |
| 3594174 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.53 | 44.0 | 3.47e-01 | 87.1% | 45.5% |
| 3245979 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 2.51e-01 | 84.7% | 91.9% |
| 3272696 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 2.93e-01 | 87.1% | 44.1% |
| 3829962 | 109.4.1.1497 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, CLASP_N, XMAP215_CLASP_TOG | 0.53 | 42.0 | 2.31e-01 | 87.1% | 8.3% |
| 2085004 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.52 | 39.0 | 3.38e-01 | 83.5% | 66.4% |
| 4061485 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.51 | 38.0 | 3.06e-01 | 80.0% | 48.6% |
| 3573666 | 109.4.1.1446 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT, HEAT_RRP12_N | 0.50 | 38.0 | 2.43e-01 | 85.9% | 18.5% |
D2
high
residues 107-171
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.72 | 56.0 | 5.04e-01 | 83.1% | 85.2% |
| 3s5tA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.69 | 45.0 | 3.43e-01 | 80.0% | 28.8% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 49.0 | 3.70e-01 | 75.4% | 93.3% |
| 7e4mA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.67 | 56.0 | 3.70e-01 | 92.3% | 47.7% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.64 | 52.0 | 3.77e-01 | 87.7% | 50.3% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 32.0 | 3.36e-01 | 84.6% | 51.7% |
| 7eu3E01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 46.0 | 4.17e-01 | 80.0% | 98.9% |
| 3ejbH02 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 53.0 | 3.58e-01 | 100.0% | 32.1% |
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.60 | 43.0 | 3.36e-01 | 76.9% | 45.1% |
| 1aipH03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 39.0 | 4.23e-01 | 76.9% | 92.3% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 43.0 | 2.95e-01 | 92.3% | 73.1% |
| 7wj9A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 46.0 | 3.01e-01 | 100.0% | 92.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3400498 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.76 | 56.0 | 4.52e-01 | 78.5% | 57.5% |
| 4949205 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.71 | 51.0 | 3.48e-01 | 75.4% | 23.0% |
| 5039692 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 53.0 | 4.70e-01 | 96.9% | 55.8% |
| 3255531 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.68 | 53.0 | 4.90e-01 | 86.2% | 68.2% |
| 3883096 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.67 | 61.0 | 3.79e-01 | 98.5% | 33.8% |
| 3648687 | 604.12.1.89 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › CDP-OH_P_transf | 0.66 | 46.0 | 4.02e-01 | 75.4% | 49.5% |
| 4417777 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.65 | 46.0 | 3.66e-01 | 73.8% | 36.9% |
| 4222581 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.65 | 44.0 | 3.78e-01 | 75.4% | 42.7% |
| 4983924 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.64 | 49.0 | 3.25e-01 | 81.5% | 48.6% |
| 5034701 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.64 | 52.0 | 4.17e-01 | 86.2% | 50.0% |
| 5055477 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 53.0 | 4.92e-01 | 89.2% | 77.5% |
| 4982912 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.62 | 51.0 | 4.55e-01 | 89.2% | 72.2% |
| 3847484 | 633.26.1.3 ↗ | alpha bundles › Bromodomain-like › SidC lipid-binding domain › SidC lipid-binding domain › PF31009 | 0.57 | 52.0 | 3.80e-01 | 100.0% | 75.9% |