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OQ436456.1__WEU67324.1__X__00057

Bact-Vir

OQ436456.1__WEU67324.1__X__00057

Identity

Accession:
OQ436456 ↗
Kingdom:
phage

Quality

64.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_JGB6

TaxID: 3032414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-159_177-190
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11775.14 best CobT_C 39.8 5.60e-10 43.4% 27.3%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b4yA01 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.64 29.0 3.00e-01 72.4% 42.1%
4tveA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 25.0 2.90e-01 87.5% 48.7%
3gbvA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 29.0 2.96e-01 71.1% 45.6%
3lloA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.59 28.0 3.05e-01 74.3% 50.8%
1ceqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 28.0 3.01e-01 72.4% 49.6%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.58 30.0 3.05e-01 78.9% 48.6%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 33.0 3.23e-01 98.0% 50.9%
3hcwA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 29.0 3.04e-01 77.6% 49.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942593 2006.1.6.20 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › CobT_C 0.76 70.0 5.48e-01 98.0% 63.3%
5004192 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.69 45.0 3.93e-01 85.5% 46.5%
4059478 2006.1.6.20 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › CobT_C 0.69 62.0 4.98e-01 97.4% 55.9%
5011082 2006.1.6.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.68 48.0 4.33e-01 88.2% 54.1%
5006566 2006.1.6.45 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 0.67 38.0 3.50e-01 80.3% 43.6%
3861586 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.67 54.0 4.27e-01 83.6% 54.9%
4679461 2006.1.6.38 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 0.67 39.0 3.34e-01 80.3% 38.3%
4202670 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.66 36.0 3.09e-01 77.0% 35.6%
3212283 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.64 53.0 4.35e-01 86.8% 60.0%
4092963 2006.1.6.38 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF444 0.64 37.0 3.35e-01 77.0% 43.5%
3602816 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.64 44.0 3.73e-01 87.5% 45.9%
3962305 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.64 35.0 3.48e-01 76.3% 51.0%
3586874 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.63 58.0 4.61e-01 98.0% 54.2%
3604315 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.63 44.0 3.96e-01 86.8% 53.0%
4401259 2006.1.6.21 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_CoxE 0.63 45.0 3.84e-01 90.1% 46.7%
4128742 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.62 41.0 3.69e-01 87.5% 48.6%
None — 0.61 48.0 4.14e-01 90.1% 53.6%
4031918 2006.1.6.20 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › CobT_C 0.60 52.0 4.30e-01 94.7% 55.9%
4959609 2006.1.6.12 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.59 46.0 3.94e-01 88.2% 50.8%
4989224 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.59 51.0 4.27e-01 92.1% 57.3%
5049925 2007.3.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.57 33.0 3.21e-01 73.7% 50.0%
3646404 2485.1.1.45 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.56 32.0 3.14e-01 98.0% 50.0%
3879317 2003.1.1.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ISPD_C 0.54 29.0 2.88e-01 74.3% 48.1%
2763378 2485.1.1.45 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.54 31.0 3.14e-01 98.0% 56.0%
3263858 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.52 26.0 2.99e-01 73.7% 62.9%
3755687 2485.1.1.72 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA_2 0.51 29.0 3.36e-01 98.7% 76.4%
4987552 2005.1.1.12 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e 0.51 33.0 2.73e-01 71.1% 38.4%
3836171 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 35.0 2.61e-01 94.1% 27.4%