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OQ436456.1WEU67333.1X__00066

Bact-Vir

OQ436456.1__WEU67333.1__X__00066

Identity

Accession:: OQ436456 ↗
Kingdom:: phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_JGB6

TaxID: 3032414

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-241

PDB

Domain cluster: rep: IMGVR_UViG_3300028048_000061-3300028048-Ga0256405_1000034383__D5-304

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02811.27 best	PHP	37.3	5.00e-09	55.3%	79.3%

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yb1A01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.78	56.0	5.91e-01	100.0%	80.6%
2hpiA01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.75	71.0	6.76e-01	100.0%	85.5%
2hnhA01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.75	70.0	6.64e-01	100.0%	84.8%
3o0fA01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.75	53.0	5.60e-01	100.0%	79.3%
3f2bA02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.72	64.0	6.32e-01	100.0%	87.3%
3ls9A02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.56	53.0	4.71e-01	100.0%	78.1%
4v1xA02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.56	52.0	4.51e-01	100.0%	71.9%
3c3mA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.56	31.0	3.99e-01	76.4%	99.2%
3gt7A00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.55	29.0	3.76e-01	99.2%	87.9%
3e0lA02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.55	51.0	4.69e-01	100.0%	78.6%
6sj3B01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.54	51.0	4.56e-01	100.0%	75.8%
3s5jA02	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	32.0	3.98e-01	99.2%	98.5%
4cqbA02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.53	49.0	4.50e-01	100.0%	77.1%
4k2hD00	3.40.50.880	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain	0.53	33.0	3.72e-01	99.2%	79.6%
3lrtA02	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	29.0	3.72e-01	97.9%	94.7%
2q5cA01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	21.0	3.36e-01	86.5%	95.9%
3dz1A00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.51	39.0	3.65e-01	99.2%	62.1%
1reqB01	3.20.20.240	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase	0.51	44.0	3.67e-01	94.1%	70.3%
3aptA00	3.20.20.220	Alpha Beta › Alpha-Beta Barrel › TIM Barrel ›	0.51	45.0	4.25e-01	98.7%	77.4%
4joqA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	32.0	3.82e-01	92.8%	93.5%
2dskA00	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.51	47.0	4.34e-01	99.6%	94.0%
5ijgA01	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.50	34.0	3.62e-01	100.0%	75.6%

ECOD (44)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4046424	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.78	62.0	6.31e-01	100.0%	83.0%
4032341	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.77	60.0	6.10e-01	100.0%	82.2%
3941807	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.77	73.0	6.79e-01	100.0%	87.6%
4081292	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.77	66.0	6.48e-01	100.0%	84.0%
3590785	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.76	67.0	6.57e-01	100.0%	85.1%
4043425	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.76	70.0	6.64e-01	100.0%	83.7%
4162930	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.76	54.0	5.78e-01	100.0%	82.4%
4055015	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.76	59.0	6.05e-01	100.0%	83.1%
4370676	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.76	68.0	6.55e-01	100.0%	84.6%
1392196	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.75	70.0	6.25e-01	100.0%	72.2%
4942806	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.75	46.0	5.25e-01	100.0%	78.9%
4042253	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.75	68.0	6.54e-01	100.0%	85.0%
4977478	2002.1.1.172 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C	0.75	48.0	5.60e-01	100.0%	87.4%
3952074	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.74	71.0	6.48e-01	100.0%	83.7%
4226067	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.74	71.0	6.68e-01	100.0%	85.8%
3838289	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.74	71.0	6.56e-01	100.0%	83.8%
4176786	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.74	70.0	6.39e-01	100.0%	86.9%
4385591	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.73	67.0	6.44e-01	100.0%	84.9%
4240120	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.73	66.0	6.37e-01	100.0%	84.2%
4139415	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.73	68.0	6.47e-01	100.0%	84.7%
3291422	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.73	69.0	6.42e-01	100.0%	83.1%
4941267	2002.1.1.172 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C	0.72	50.0	5.29e-01	98.7%	78.1%
4539331	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.71	67.0	6.16e-01	100.0%	85.0%
5027728	2002.1.1.172 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C	0.70	48.0	5.20e-01	98.7%	80.0%
4501664	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.69	66.0	5.91e-01	100.0%	83.2%
4277369	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.69	66.0	6.11e-01	100.0%	83.8%
4931709	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.69	47.0	4.85e-01	98.7%	72.0%
4385658	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.69	65.0	5.96e-01	100.0%	83.3%
4173725	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.68	65.0	6.05e-01	100.0%	84.6%
4963224	2002.1.1.172 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP_C	0.68	46.0	4.92e-01	98.7%	77.6%
5060825	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.62	51.0	5.09e-01	96.6%	82.9%
5001833	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.59	56.0	5.32e-01	100.0%	90.2%
3588147	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.58	53.0	4.29e-01	96.2%	56.2%
5062294	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.57	54.0	5.03e-01	100.0%	86.7%
5030578	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.57	53.0	4.96e-01	98.7%	88.8%
None	—		0.56	36.0	4.09e-01	99.6%	85.1%
3280356	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.56	53.0	4.90e-01	100.0%	82.7%
3606799	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.56	52.0	4.13e-01	100.0%	63.4%
4153569	7573.1.1.1 ↗	a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran	0.56	31.0	3.83e-01	97.0%	86.2%
5048383	2002.1.1.102 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP	0.55	52.0	4.91e-01	100.0%	86.4%
3199840	2005.1.1.18 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase	0.53	29.0	3.59e-01	84.4%	82.8%
4425971	2002.1.1.152 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3	0.53	49.0	4.21e-01	100.0%	65.1%
4084528	7573.1.1.3 ↗	a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyl_synth	0.52	31.0	3.60e-01	97.9%	81.8%
3945580	2002.1.1.174 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C	0.51	41.0	3.70e-01	90.7%	60.6%

D2 medium residues 260-322

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fm5A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.65	47.0	3.74e-01	77.8%	65.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4434200	142.1.1.5 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI	0.57	46.0	3.82e-01	92.1%	50.9%