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OQ436456.1__WEU67341.1__X__00074

Bact-Vir

OQ436456.1__WEU67341.1__X__00074

Identity

Accession:
OQ436456 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_JGB6

TaxID: 3032414

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-164_267-304
PDB
Domain cluster: rep: NC_070967.1__YP_010671382.1__PQC17_gp233__00233__D3-158_252-294
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02739.23 best 5_3_exonuc_N 108.0 6.00e-31 91.5% 98.8%
D2 high residues 173-259
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zdbA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.88 69.0 6.86e-01 100.0% 79.8%
5hmlA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.78 61.0 6.37e-01 100.0% 90.0%
5v07Z02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.73 56.0 5.93e-01 100.0% 92.3%
5k97A02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.72 51.0 5.60e-01 100.0% 95.6%
3h7iA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.61 48.0 5.12e-01 100.0% 96.1%
1bedA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.53e-01 100.0% 67.4%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4644646 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.87 67.0 6.83e-01 100.0% 82.4%
4030601 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.87 68.0 6.10e-01 100.0% 61.7%
4030950 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.87 68.0 6.10e-01 100.0% 61.7%
4364220 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.87 70.0 6.23e-01 100.0% 61.7%
4429068 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.87 68.0 5.90e-01 100.0% 56.8%
4233346 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.87 67.0 4.41e-01 100.0% 21.5%
3987574 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.87 68.0 4.58e-01 100.0% 24.4%
4575153 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.86 67.0 6.27e-01 100.0% 67.6%
4481584 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.86 69.0 6.26e-01 100.0% 64.3%
4343577 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.86 67.0 4.70e-01 100.0% 29.0%
4306344 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.86 67.0 6.97e-01 100.0% 88.7%
4339694 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.86 68.0 4.14e-01 100.0% 15.5%
4594308 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.86 66.0 6.00e-01 100.0% 61.7%
4299586 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.85 70.0 7.33e-01 97.7% 95.0%
4367091 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 67.0 4.48e-01 100.0% 23.6%
4561919 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 67.0 4.72e-01 100.0% 29.4%
3293024 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.85 67.0 5.69e-01 100.0% 53.3%
3261268 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.85 66.0 4.19e-01 100.0% 18.4%
4072515 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 66.0 4.12e-01 100.0% 16.9%
3163747 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 71.0 4.35e-01 100.0% 15.9%
3980678 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.85 71.0 4.67e-01 100.0% 23.3%
3515038 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.84 71.0 6.21e-01 100.0% 62.4%
4995753 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.84 65.0 5.83e-01 100.0% 59.7%
4319500 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.84 68.0 4.13e-01 100.0% 15.4%
4237116 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.84 65.0 6.78e-01 100.0% 88.7%
4341259 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.84 63.0 6.79e-01 100.0% 92.0%
3839957 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.84 68.0 4.44e-01 100.0% 22.1%
4299768 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.84 65.0 6.01e-01 100.0% 65.5%
3593817 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 65.0 6.82e-01 100.0% 90.0%
4173211 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.83 65.0 4.31e-01 100.0% 22.2%
4291004 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.83 65.0 4.36e-01 100.0% 23.6%
4303922 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.83 65.0 5.87e-01 100.0% 62.6%
None — 0.83 65.0 6.44e-01 100.0% 80.0%
3956065 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.83 67.0 7.00e-01 100.0% 93.8%
3610020 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.82 64.0 6.53e-01 100.0% 84.7%
2168201 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.82 67.0 5.81e-01 100.0% 59.5%
3964109 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.82 63.0 6.74e-01 100.0% 94.7%
2074406 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.81 64.0 5.95e-01 100.0% 67.9%
3283743 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 62.0 4.07e-01 98.9% 20.9%
3942250 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.80 74.0 6.29e-01 100.0% 65.9%
4440292 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.76 56.0 5.11e-01 100.0% 59.1%
3329195 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.76 63.0 5.55e-01 100.0% 62.4%
3641047 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.73 60.0 6.24e-01 98.9% 96.2%
1101808 3723.1.1.1 ↗ alpha arrays › Phosphoinositide phosphatase insertion helical domain › Phosphoinositide phosphatase insertion helical domain › Phosphoinositide phosphatase insertion helical domain › PI_PP_I 0.57 44.0 4.02e-01 86.2% 95.9%