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OQ436456.1__WEU67391.1__X__00124

Bact-Vir

OQ436456.1__WEU67391.1__X__00124

Identity

Accession:
OQ436456 ↗
Kingdom:
phage

Quality

86.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-55
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.78 64.0 6.16e-01 90.9% 85.5%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 48.0 5.17e-01 83.6% 93.5%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 45.0 4.55e-01 100.0% 70.9%
4n30A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 47.0 3.29e-01 76.4% 87.9%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 43.0 4.33e-01 72.7% 75.4%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 49.0 3.53e-01 85.5% 43.9%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 42.0 4.57e-01 70.9% 100.0%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 47.0 3.37e-01 83.6% 47.6%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 36.0 4.16e-01 92.7% 93.9%
3icsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 47.0 3.22e-01 83.6% 54.4%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 44.0 3.14e-01 81.8% 39.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 36.0 3.28e-01 92.7% 41.3%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 35.0 3.67e-01 85.5% 62.0%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.04e-01 81.8% 32.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 42.0 4.05e-01 87.3% 65.2%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 47.0 2.99e-01 98.2% 55.5%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 41.0 4.11e-01 85.5% 78.6%
1o5zA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 44.0 2.89e-01 94.5% 25.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.05e-01 94.5% 68.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.06e-01 87.3% 80.4%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.77e-01 96.4% 18.2%
3oc4B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.89e-01 83.6% 48.4%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.83e-01 81.8% 90.5%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.72e-01 100.0% 15.2%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 4.05e-01 89.1% 79.7%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.52e-01 100.0% 98.3%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.56e-01 72.7% 17.9%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.49e-01 80.0% 61.2%
6ieoA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 38.0 3.36e-01 83.6% 93.6%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 4.06e-01 87.3% 93.9%
3qr8A02 6.20.150.10 Special › Other non-globular › Chondroitinase Ac; Chain A, domain 3 › 0.52 32.0 3.02e-01 76.4% 45.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.10e-01 92.7% 94.3%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 41.0 3.85e-01 96.4% 85.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 3.67e-01 90.9% 68.4%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 37.0 2.89e-01 83.6% 62.1%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.62e-01 92.7% 62.5%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.13e-01 81.8% 79.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.80e-01 85.5% 93.6%
3utoA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.03e-01 87.3% 87.4%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 42.0 2.76e-01 100.0% 70.2%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 36.0 2.75e-01 83.6% 51.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701625 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.78 54.0 5.86e-01 76.4% 88.9%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 58.0 6.09e-01 89.1% 92.0%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 60.0 5.84e-01 87.3% 91.7%
5024226 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.75 52.0 5.60e-01 76.4% 88.9%
5050109 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.75 64.0 5.55e-01 96.4% 68.2%
5032137 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.75 64.0 5.91e-01 96.4% 81.4%
4948153 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 63.0 5.84e-01 96.4% 81.4%
4956733 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.74 63.0 5.83e-01 96.4% 80.0%
5032252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 55.0 5.71e-01 81.8% 100.0%
4933213 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.73 63.0 5.83e-01 96.4% 81.4%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 59.0 5.94e-01 92.7% 90.9%
4863926 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.70 52.0 5.28e-01 87.3% 81.5%
5026901 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 57.0 5.59e-01 92.7% 83.3%
3781077 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.68 49.0 3.99e-01 76.4% 49.5%
4930465 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.65 48.0 4.73e-01 89.1% 73.3%
3243842 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 48.0 3.90e-01 81.8% 46.4%
4460368 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 45.0 4.84e-01 74.5% 91.1%
5070992 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.64 50.0 4.92e-01 85.5% 78.3%
4964214 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.64 43.0 4.33e-01 90.9% 70.9%
3606532 2484.6.1.0 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.63 46.0 3.94e-01 78.2% 51.1%
4981763 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.85e-01 72.7% 100.0%
5044393 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 46.0 4.53e-01 81.8% 81.7%
3586566 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 4.84e-01 85.5% 87.3%
3333684 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 49.0 4.68e-01 90.9% 92.3%
3501282 3246.1.1.0 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins 0.61 43.0 4.04e-01 76.4% 68.6%
4959885 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.61 52.0 4.51e-01 96.4% 71.8%
4440689 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 45.0 4.29e-01 81.8% 86.2%
4879215 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.60 50.0 4.32e-01 100.0% 88.4%
4571489 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.60 43.0 2.65e-01 80.0% 85.7%
4122811 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.59 49.0 3.12e-01 96.4% 34.1%
3584345 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.59 45.0 3.41e-01 83.6% 40.7%
3597599 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 51.0 4.24e-01 100.0% 93.0%
3582536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 39.0 3.19e-01 81.8% 33.0%
2426645 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.59 42.0 4.24e-01 76.4% 83.6%
4941366 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 4.33e-01 85.5% 97.5%
3603358 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 45.0 4.38e-01 85.5% 90.0%
3797162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 44.0 3.87e-01 92.7% 53.3%
5044768 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 4.64e-01 90.9% 94.5%
5047404 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 3.96e-01 74.5% 89.1%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 44.0 4.06e-01 89.1% 72.0%
3603442 101.8.1.1 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.56 46.0 2.70e-01 96.4% 13.9%
3574639 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 43.0 2.79e-01 90.9% 16.5%
1348634 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.55 41.0 4.11e-01 85.5% 78.6%
3907533 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.55 36.0 3.88e-01 70.9% 90.0%
3422222 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.55 39.0 3.15e-01 78.2% 56.7%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.70e-01 81.8% 77.3%
3878271 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.54 44.0 3.28e-01 94.5% 36.1%
4026282 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 43.0 3.78e-01 94.5% 58.9%
3795301 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.54 43.0 3.89e-01 94.5% 63.7%
5008404 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.53 35.0 3.73e-01 74.5% 84.4%
4026161 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.53 44.0 3.44e-01 94.5% 81.6%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.53 42.0 3.15e-01 94.5% 32.1%
3917568 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 42.0 3.47e-01 94.5% 47.0%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 42.0 3.77e-01 94.5% 77.6%
4873081 3820.1.1.0 a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain 0.52 40.0 3.67e-01 85.5% 76.3%
3398023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.05e-01 94.5% 42.3%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.52 43.0 4.08e-01 100.0% 77.1%
3554209 6148.1.1.1 few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › EpCAM_N 0.52 34.0 3.62e-01 100.0% 95.0%
3617175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 40.0 4.05e-01 89.1% 92.7%
3414912 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 41.0 3.49e-01 94.5% 51.4%
4064354 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.51 43.0 4.23e-01 100.0% 95.0%
5025289 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.51 42.0 2.88e-01 100.0% 70.4%
5016027 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.33e-01 87.3% 88.9%