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OQ436456.1__WEU67429.1__X__00162

Bact-Vir

OQ436456.1__WEU67429.1__X__00162

Identity

Accession:
OQ436456 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-48
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.69 59.0 4.02e-01 100.0% 46.7%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 50.0 3.11e-01 84.1% 89.5%
2xrfC00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.65 50.0 3.05e-01 84.1% 49.3%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.65 49.0 3.62e-01 84.1% 80.2%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 52.0 3.85e-01 100.0% 32.6%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.63 48.0 2.92e-01 86.4% 33.9%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 52.0 4.23e-01 100.0% 69.1%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 44.0 3.56e-01 75.0% 39.4%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.62 49.0 3.24e-01 100.0% 28.0%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 2.78e-01 88.6% 14.9%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 46.0 3.00e-01 88.6% 39.3%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.61 46.0 3.22e-01 100.0% 25.7%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 42.0 2.82e-01 72.7% 73.8%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.60 48.0 3.59e-01 100.0% 48.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.60 48.0 4.69e-01 100.0% 88.0%
3c6mC01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.60 48.0 4.87e-01 100.0% 97.7%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.59 44.0 3.30e-01 100.0% 27.7%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 48.0 4.18e-01 100.0% 64.5%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 47.0 3.10e-01 88.6% 63.2%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.61e-01 90.9% 53.8%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 47.0 3.67e-01 100.0% 42.1%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 3.16e-01 75.0% 51.1%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 45.0 3.49e-01 95.5% 39.7%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.58 47.0 3.06e-01 100.0% 97.5%
2je8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 46.0 3.12e-01 100.0% 28.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 45.0 3.75e-01 100.0% 53.3%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.57 44.0 3.30e-01 97.7% 33.6%
4cvuA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 47.0 3.12e-01 100.0% 27.1%
4umwA02 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.56 38.0 3.09e-01 100.0% 36.0%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.56 41.0 2.84e-01 81.8% 78.7%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 42.0 2.72e-01 81.8% 27.7%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.55 38.0 3.87e-01 81.8% 73.3%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.55 44.0 3.15e-01 90.9% 48.6%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.52e-01 100.0% 49.4%
3i6dA02 3.90.660.20 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 0.55 46.0 3.07e-01 97.7% 51.0%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 36.0 2.45e-01 70.5% 82.7%
4x9xA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.08e-01 95.5% 59.7%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 42.0 3.01e-01 90.9% 62.4%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.54 40.0 3.39e-01 81.8% 94.6%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 45.0 3.12e-01 95.5% 47.1%
2vvlG01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 2.70e-01 90.9% 44.9%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 43.0 2.87e-01 93.2% 40.8%
4i9fA03 3.30.300.290 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.52 44.0 3.73e-01 97.7% 71.4%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 42.0 3.62e-01 97.7% 100.0%
2hc8A00 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.52 35.0 2.71e-01 100.0% 28.3%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 43.0 3.56e-01 100.0% 60.7%
3sz6A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.07e-01 100.0% 91.4%
4r70B03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.50 42.0 2.94e-01 95.5% 49.7%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.50 38.0 2.78e-01 100.0% 50.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3420651 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.68 47.0 2.79e-01 70.5% 12.1%
2832670 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 46.0 2.79e-01 84.1% 11.6%
3543655 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.65 49.0 3.19e-01 86.4% 25.0%
3705667 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.65 54.0 3.54e-01 100.0% 48.4%
3798470 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.64 50.0 3.05e-01 86.4% 48.4%
3319860 109.4.1.2173 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif 0.64 52.0 3.13e-01 90.9% 14.8%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 50.0 4.51e-01 93.2% 100.0%
3466238 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.63 48.0 2.79e-01 81.8% 41.1%
3834151 109.4.1.3495 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, PPR_long, E_motif, TPR_24 0.63 52.0 2.91e-01 90.9% 8.9%
3829044 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.63 52.0 3.12e-01 90.9% 16.6%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.62 50.0 3.34e-01 93.2% 21.1%
3252861 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.62 49.0 3.20e-01 93.2% 18.1%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.62 47.0 3.05e-01 84.1% 25.1%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.62 50.0 3.19e-01 93.2% 17.3%
5044181 304.117.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.62 50.0 4.41e-01 100.0% 97.3%
3343923 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.62 52.0 3.10e-01 90.9% 15.8%
3723733 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.62 48.0 2.79e-01 86.4% 45.3%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.62 50.0 3.21e-01 97.7% 18.2%
3325708 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.62 50.0 3.03e-01 90.9% 15.4%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.61 49.0 3.23e-01 93.2% 20.0%
3802249 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.61 50.0 2.80e-01 90.9% 8.3%
3648065 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.61 49.0 2.88e-01 93.2% 47.1%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 48.0 4.75e-01 100.0% 88.0%
3907235 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.60 48.0 3.10e-01 93.2% 17.3%
3700429 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.60 45.0 3.19e-01 79.5% 73.6%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 48.0 4.51e-01 100.0% 83.1%
4353391 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 43.0 2.42e-01 75.0% 15.1%
2413771 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.59 42.0 2.73e-01 75.0% 56.6%
5038375 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.59 48.0 3.18e-01 95.5% 20.0%
3587620 304.55.1.22 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL 0.58 48.0 3.19e-01 100.0% 42.4%
4940035 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 44.0 3.32e-01 79.5% 85.5%
5013701 3572.1.1.2 a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.58 46.0 3.55e-01 90.9% 81.9%
5031824 2004.1.1.220 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.58 45.0 2.59e-01 90.9% 8.8%
3308391 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.56 44.0 3.39e-01 100.0% 98.5%
4951953 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.56 41.0 2.70e-01 79.5% 68.7%
4797400 220.3.1.5 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop 0.55 39.0 3.82e-01 75.0% 77.1%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.55 41.0 2.85e-01 100.0% 20.0%
4998414 329.1.1.2 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › DUF4443 0.54 39.0 3.07e-01 86.4% 40.0%
4867320 221.1.1.66 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PIK3CG_ABD 0.54 46.0 3.58e-01 97.7% 75.5%
2982157 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.54 43.0 2.86e-01 90.9% 37.0%
137366 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 38.0 2.63e-01 86.4% 20.1%
2042105 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.54 47.0 3.00e-01 95.5% 36.3%
3704468 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 43.0 3.38e-01 97.7% 86.4%
3600775 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 38.0 3.87e-01 100.0% 91.1%
3621341 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 44.0 3.81e-01 100.0% 89.3%
3329353 3164.1.1.3 few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › DYW_deaminase 0.51 41.0 3.10e-01 97.7% 86.7%
4212253 304.150.1.1 a+b two layers › Alpha-beta plaits › Adapter protein mecA 2 C-terminal domain › Adapter protein mecA 2 C-terminal domain › MecA 0.50 39.0 3.30e-01 97.7% 74.2%
4008896 11.1.1.1286 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27224 0.50 36.0 2.79e-01 81.8% 79.2%