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OQ436456.1__WEU67468.1__X__00201

Bact-Vir

OQ436456.1__WEU67468.1__X__00201

Identity

Accession:
OQ436456 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_JGB6

TaxID: 3032414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-82
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00005.34 best ABC_tran 26.3 1.40e-05 53.1% 25.6%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7k2tA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 61.0 4.29e-01 100.0% 35.9%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 35.0 3.52e-01 100.0% 60.5%
4qlaB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 40.0 2.63e-01 81.5% 52.6%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.52 38.0 3.81e-01 96.3% 75.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032264 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.80 71.0 5.09e-01 100.0% 34.3%
4994965 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.79 71.0 4.99e-01 100.0% 41.2%
5019222 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.70 63.0 4.39e-01 100.0% 34.0%
None — 0.67 61.0 3.80e-01 100.0% 24.3%
3665322 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.65 59.0 4.43e-01 100.0% 57.4%
4553648 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.65 60.0 3.98e-01 100.0% 29.2%
3560358 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.56 35.0 2.90e-01 95.1% 34.5%
3173023 805.1.1.2 ↗ a+b complex topology › 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain › 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain › 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain › NadN_nucleosid_C 0.54 47.0 3.47e-01 100.0% 54.5%
5037858 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.51 31.0 3.29e-01 93.8% 68.6%
3652887 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 3.60e-01 100.0% 67.7%
D2 high residues 84-134
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yerA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 65.0 4.26e-01 100.0% 28.8%
6bzrB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 57.0 3.83e-01 100.0% 27.3%
3t0yA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 39.0 3.64e-01 88.2% 78.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947820 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.88 81.0 5.75e-01 100.0% 40.7%
5032264 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.88 81.0 5.10e-01 100.0% 24.8%
5023734 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.84 76.0 4.74e-01 100.0% 34.5%
4994965 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.84 75.0 4.73e-01 100.0% 35.5%
4154674 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.76 67.0 4.23e-01 100.0% 39.9%
5024243 102.2.1.3 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.76 66.0 5.86e-01 100.0% 80.0%
3287708 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.74 64.0 4.11e-01 100.0% 37.5%
5039498 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.73 63.0 4.16e-01 100.0% 42.3%
4202594 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 62.0 3.82e-01 100.0% 25.9%
4957907 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.71 60.0 3.87e-01 100.0% 35.7%
4951007 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.70 60.0 3.93e-01 100.0% 24.4%
4527609 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.69 58.0 4.00e-01 100.0% 45.6%
3228016 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.51 40.0 3.01e-01 98.0% 44.8%