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OQ448194.1__WJJ57974.1__80B_00002__00002

Bact-Vir

OQ448194.1__WJJ57974.1__80B_00002__00002

Identity

Accession:
OQ448194 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Sepunavirus› Staphylococcus_phage_80B

TaxID: 3038196

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01473.27 best Choline_bind_1 10.0 1.40e+00 20.7% 57.9%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4zi8B01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 35.0 3.34e-01 70.1% 93.5%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.11e-01 85.1% 88.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3831192 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.58 28.0 2.88e-01 94.3% 42.4%
3689641 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.51 43.0 4.28e-01 95.4% 100.0%
3725595 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 46.0 3.16e-01 100.0% 70.9%
D2 high residues 111-164
PDB
Domain cluster: rep: OP172756.1__WAX11484.1__CB473P2_00064__00064__D2-63
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 40.5 2.30e-10 83.3% 89.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.90 83.0 6.47e-01 100.0% 51.9%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.72 62.0 5.37e-01 96.3% 78.3%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.71 60.0 4.39e-01 100.0% 45.1%
3plwA00 3.30.40.190 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.67 54.0 4.32e-01 90.7% 75.5%
1vj1A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.56 45.0 3.35e-01 98.1% 93.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266965 378.1.2.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.93 77.0 7.16e-01 87.0% 75.4%
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.92 84.0 6.35e-01 98.1% 47.8%
3981149 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.88 80.0 6.90e-01 98.1% 87.3%
3539740 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.85 74.0 5.50e-01 100.0% 40.8%
5053631 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.84 76.0 5.95e-01 100.0% 68.2%
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.83 70.0 5.47e-01 100.0% 45.5%
4303143 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.83 71.0 6.04e-01 94.4% 65.9%
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.82 74.0 6.56e-01 98.1% 84.0%
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.78 65.0 6.12e-01 90.7% 95.4%
5049537 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.77 64.0 5.29e-01 90.7% 66.0%
5082962 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 65.0 5.10e-01 94.4% 57.3%
3695527 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.76 65.0 5.09e-01 100.0% 63.3%
3588377 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 64.0 5.23e-01 98.1% 74.0%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 59.0 5.22e-01 92.6% 85.0%
2628026 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 61.0 4.16e-01 98.1% 75.7%
89916 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.71 60.0 4.38e-01 100.0% 45.1%
8233 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.71 60.0 4.39e-01 100.0% 45.1%
3218708 378.1.2.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › Tox-GHH 0.70 48.0 4.39e-01 74.1% 90.5%
4959590 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.69 58.0 5.02e-01 94.4% 77.6%
3170758 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 51.0 4.26e-01 87.0% 76.8%
3182607 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 48.0 4.51e-01 83.3% 92.3%
4025906 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.55 36.0 2.56e-01 94.4% 21.1%