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OQ471969.1__WEU68031.1__vBAbaMABMM1_11__00011

Bact-Vir

OQ471969.1__WEU68031.1__vBAbaMABMM1_11__00011

Identity

Accession:
OQ471969 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-132
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 41.0 4.04e-01 74.0% 83.1%
1inpA02 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 40.0 3.58e-01 72.5% 96.8%
2i9iA00 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.57 40.0 3.37e-01 72.5% 78.3%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 41.0 4.12e-01 75.6% 99.2%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.54 38.0 3.74e-01 71.0% 95.0%
3kysA00 2.70.50.80 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › 0.54 37.0 3.18e-01 70.2% 93.3%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.54 38.0 3.48e-01 72.5% 91.2%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 3.77e-01 78.6% 88.8%
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.95e-01 100.0% 86.8%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 3.68e-01 95.4% 64.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 27.0 3.61e-01 100.0% 100.0%
1t71A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 38.0 3.02e-01 77.1% 88.6%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.51 39.0 3.25e-01 80.9% 62.3%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.51 37.0 3.23e-01 74.8% 85.7%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.87e-01 81.7% 89.9%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.50 36.0 3.57e-01 73.3% 91.2%
1zvnA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 34.0 3.93e-01 76.3% 95.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3865029 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.62 35.0 4.29e-01 74.0% 85.9%
5035683 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.60 30.0 3.59e-01 100.0% 70.5%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.60 30.0 4.18e-01 77.1% 96.9%
4150515 11.2.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_SHIP1-2_2nd 0.60 44.0 4.27e-01 76.3% 90.3%
3771985 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.59 30.0 3.63e-01 100.0% 72.2%
3165222 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 29.0 3.59e-01 77.1% 75.3%
3506831 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.56 28.0 3.57e-01 76.3% 80.0%
3967397 7503.1.1.8 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.55 39.0 3.75e-01 72.5% 94.7%
3984963 330.1.1.32 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › rve 0.54 28.0 3.75e-01 72.5% 92.9%
3261977 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 31.0 3.81e-01 76.3% 89.4%
3507785 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 31.0 3.82e-01 77.9% 90.6%
3389863 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.90e-01 75.6% 95.2%
4025560 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.52 30.0 3.52e-01 77.9% 80.0%
5028530 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 30.0 3.61e-01 77.1% 84.4%
4927022 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 30.0 3.44e-01 77.9% 80.0%
D2 high residues 142-328
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3brsA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 28.0 3.29e-01 100.0% 53.7%
3i09A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 47.0 4.59e-01 95.7% 68.8%
2fliC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 40.0 3.82e-01 92.5% 55.7%
3ve9A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 40.0 3.88e-01 94.1% 59.8%
2czdB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 40.0 3.91e-01 94.1% 60.4%
3cawA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.58 42.0 3.90e-01 93.6% 60.9%
1losA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 38.0 3.69e-01 93.0% 58.8%
3tr2B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 39.0 3.74e-01 93.6% 60.6%
3ik4A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 36.0 3.37e-01 94.1% 50.6%
3tfxA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 39.0 3.68e-01 93.0% 59.7%
2bvdA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 44.0 3.87e-01 93.0% 58.3%
2q02A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.54 41.0 3.64e-01 93.0% 54.8%
3dz1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 40.0 3.46e-01 94.1% 49.2%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.53 45.0 3.87e-01 89.8% 58.8%
3v75A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 41.0 3.61e-01 94.7% 56.4%
3oidC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 42.0 3.85e-01 87.2% 72.6%
2eplX02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 44.0 3.75e-01 93.6% 61.8%
5iz4A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.94e-01 90.9% 70.9%
3nl6C02 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 3.80e-01 93.6% 70.1%
3w0lB03 3.40.50.12620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 31.0 3.55e-01 85.6% 83.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995822 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.82 75.0 6.63e-01 97.3% 69.4%
3944167 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.76 68.0 5.94e-01 95.7% 64.8%
3960866 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.62 34.0 3.71e-01 94.1% 63.2%
4990088 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.61 41.0 3.78e-01 93.6% 51.2%
4998999 2003.1.1.57 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › IlvN 0.61 32.0 3.74e-01 70.6% 68.6%
4532780 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.60 39.0 3.78e-01 94.1% 58.1%
3440155 2003.1.5.121 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF1442 0.59 37.0 3.50e-01 70.6% 54.0%
4457810 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 39.0 3.49e-01 93.0% 47.5%
4848970 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 32.0 3.31e-01 89.8% 56.1%
3682937 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.56 37.0 3.49e-01 99.5% 55.9%
4076079 2002.1.1.238 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM-barrel_EndoS 0.56 44.0 3.66e-01 94.1% 48.4%
4304222 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.55 36.0 3.49e-01 94.1% 58.6%
3381278 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.54 37.0 3.54e-01 99.5% 59.5%
4461910 2002.1.1.89 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_26 0.54 44.0 3.83e-01 93.0% 56.5%
4941014 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 37.0 3.68e-01 100.0% 65.3%
3637863 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.54 35.0 3.16e-01 93.6% 46.9%
4216868 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.54 35.0 3.45e-01 94.1% 59.5%
3504837 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.54 36.0 3.51e-01 100.0% 61.0%
3213946 2003.1.7.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.53 31.0 3.12e-01 70.6% 55.4%
4092361 2002.1.1.90 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR 0.52 45.0 3.85e-01 91.4% 59.0%
5077806 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 45.0 3.59e-01 92.0% 68.4%
5044211 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 45.0 3.41e-01 90.9% 58.3%
3488188 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 37.0 3.52e-01 99.5% 61.3%
4934700 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.51 37.0 3.38e-01 100.0% 55.2%
3886960 2003.1.1.61 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR 0.51 42.0 3.17e-01 89.3% 41.1%
4992503 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 43.0 3.57e-01 91.4% 63.0%
D3 high residues 337-413
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 41.0 3.77e-01 98.7% 49.5%
4ceiA05 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.61 53.0 4.26e-01 100.0% 98.8%
1oqvA00 3.30.1690.10 Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin 0.57 50.0 3.89e-01 100.0% 45.0%
3pvuA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.56 49.0 4.84e-01 100.0% 93.8%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.20e-01 71.4% 75.9%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.55 46.0 3.40e-01 98.7% 79.5%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.55 40.0 2.69e-01 76.6% 39.3%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.63e-01 93.5% 81.5%
1cdcA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 2.84e-01 81.8% 41.7%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.50 44.0 4.00e-01 100.0% 76.9%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3545962 192.8.1.247 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Erf4 0.64 59.0 4.87e-01 100.0% 68.5%
3302022 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.62 41.0 3.72e-01 81.8% 52.0%
3312089 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 38.0 3.49e-01 96.1% 48.0%
3340500 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 46.0 3.03e-01 81.8% 21.3%
3838168 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 50.0 3.12e-01 100.0% 44.2%
4099504 604.17.1.0 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.57 40.0 4.46e-01 83.1% 96.7%
2330449 150.3.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine 0.57 42.0 3.57e-01 79.2% 54.3%
3605901 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 4.10e-01 90.9% 90.9%
4018584 6155.1.1.15 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 0.56 48.0 3.94e-01 98.7% 81.3%
3319564 219.1.1.113 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.55 47.0 3.81e-01 100.0% 100.0%
3422502 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.54 35.0 3.17e-01 90.9% 47.6%
3632364 603.1.1.120 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF846 0.53 44.0 3.51e-01 93.5% 82.4%
3673899 158.1.1.1 alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.53 44.0 2.61e-01 97.4% 32.5%
3875763 3095.1.1.1 extended segments › E-cadherin › E-cadherin › E-cadherin › CADH_Y-type_LIR 0.52 33.0 3.42e-01 74.0% 65.3%
4054285 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.52 41.0 2.51e-01 87.0% 27.2%
3769782 263.1.1.4 a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.51 32.0 3.42e-01 77.9% 73.5%