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OQ471969.1__WEU68046.1__vBAbaMABMM1_26__00026

Bact-Vir

OQ471969.1__WEU68046.1__vBAbaMABMM1_26__00026

Identity

Accession:
OQ471969 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_vB_AbaM_ABMM1

TaxID: 3032412

Cluster

View cluster (78 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 53-85_247-275_359-405
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ewrA02 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.52 32.0 3.17e-01 89.9% 58.0%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 29.0 2.87e-01 83.5% 48.8%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.51 29.0 3.14e-01 99.1% 66.3%
1blwC00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 30.0 2.73e-01 76.1% 44.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620932 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.50 29.0 2.83e-01 95.4% 48.8%
D2 medium residues 86-246_406-439
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kdrA02 3.40.140.120 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › 0.72 44.0 5.39e-01 97.4% 93.7%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 23.0 2.99e-01 88.2% 68.3%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.51 30.0 3.69e-01 75.9% 95.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2899924 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.61 17.0 2.55e-01 89.7% 52.9%
D3 medium residues 276-358
PDB
D4 medium residues 442-503
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.80 60.0 5.15e-01 80.6% 52.6%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.76 53.0 4.64e-01 74.2% 70.2%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.73 52.0 4.57e-01 80.6% 51.7%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.71 45.0 5.37e-01 79.0% 100.0%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.70 48.0 4.64e-01 71.0% 68.1%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 4.25e-01 77.4% 52.1%
2dkzA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.66 45.0 4.62e-01 80.6% 73.8%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 5.32e-01 83.9% 100.0%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 46.0 4.90e-01 74.2% 85.2%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.66 45.0 3.86e-01 71.0% 98.0%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 45.0 3.84e-01 75.8% 63.7%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.62 44.0 3.66e-01 74.2% 46.4%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 50.0 4.01e-01 91.9% 57.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 53.0 4.49e-01 100.0% 97.2%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.60 49.0 4.53e-01 95.2% 98.8%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.59 41.0 3.84e-01 74.2% 58.0%
2xd3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 45.0 3.13e-01 80.6% 53.1%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 47.0 4.30e-01 91.9% 94.3%
1n69B00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.59 36.0 3.41e-01 79.0% 47.5%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 48.0 3.74e-01 95.2% 55.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 40.0 3.93e-01 75.8% 71.6%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 37.0 3.51e-01 74.2% 55.0%
3m6zA03 1.10.150.740 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 37.0 3.60e-01 72.6% 61.4%
3emuA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 42.0 3.36e-01 88.7% 82.6%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 44.0 3.38e-01 93.5% 78.3%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 42.0 3.43e-01 91.9% 85.0%
1fadA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 38.0 3.39e-01 82.3% 51.6%
4r2fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 41.0 2.94e-01 90.3% 55.8%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.51 44.0 3.86e-01 98.4% 71.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3406728 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.82 54.0 4.72e-01 79.0% 46.7%
4929489 101.1.2.897 ↗ alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_2 0.80 54.0 5.40e-01 71.0% 100.0%
4044190 308.1.1.2 ↗ a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.79 54.0 4.63e-01 83.9% 46.3%
3807769 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 60.0 5.28e-01 85.5% 60.0%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 55.0 5.32e-01 77.4% 87.1%
3281058 101.35.1.10 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF4287 0.75 56.0 5.76e-01 79.0% 81.7%
4969516 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.75 53.0 5.38e-01 74.2% 85.0%
3932033 102.1.1.8 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › BAF 0.74 55.0 5.17e-01 79.0% 69.3%
1169399 101.35.1.2 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.73 50.0 5.39e-01 74.2% 84.6%
5013347 101.1.2.946 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26555 0.73 51.0 5.67e-01 74.2% 100.0%
3223878 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.73 52.0 4.00e-01 75.8% 33.1%
3970291 101.1.1.217 ↗ alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C 0.71 48.0 5.39e-01 75.8% 97.8%
3955500 101.1.2.655 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF732 0.70 52.0 4.93e-01 82.3% 74.4%
5042980 101.35.1.41 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26555 0.70 53.0 5.71e-01 80.6% 100.0%
3893 132.3.1.1 ↗ alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD 0.70 48.0 4.64e-01 71.0% 68.1%
5080067 101.1.2.752 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5343 0.69 48.0 3.70e-01 74.2% 56.4%
3737956 601.19.1.18 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.69 60.0 4.27e-01 100.0% 88.2%
3732279 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.68 47.0 4.85e-01 72.6% 95.0%
3626769 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.68 50.0 4.37e-01 77.4% 56.7%
4945083 7014.1.1.0 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 0.66 47.0 4.00e-01 77.4% 50.0%
3727687 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.66 59.0 3.75e-01 100.0% 85.4%
4984680 3962.1.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N 0.66 47.0 3.47e-01 75.8% 32.9%
4466431 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.65 59.0 3.72e-01 98.4% 75.9%
4156281 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.65 59.0 3.73e-01 98.4% 76.8%
4018586 7579.1.1.59 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase 0.62 46.0 2.83e-01 79.0% 16.4%
3505882 101.1.6.24 ↗ alpha arrays › HTH › HTH › TrpR › PF27073 0.62 48.0 4.51e-01 83.9% 92.0%
3341091 101.35.1.6 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.61 49.0 4.86e-01 88.7% 89.2%
3636418 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.61 54.0 3.44e-01 98.4% 76.5%
3971395 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.61 43.0 4.09e-01 74.2% 93.3%
1711454 633.24.1.2 ↗ alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.60 48.0 4.33e-01 90.3% 86.7%
3506304 101.1.1.317 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF27073 0.60 45.0 4.07e-01 80.6% 78.8%
3510309 164.1.1.12 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › PF27073 0.57 41.0 4.03e-01 79.0% 94.3%
3598688 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.55 45.0 3.33e-01 91.9% 45.9%
4025313 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.53 41.0 3.98e-01 88.7% 75.7%