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WHA35267.1

Arc-Vir

OQ473816__WHA35267.1__SPV3-ORF37__00036

Identity

Accession:
OQ473816 ↗
Protein ID:
WHA35267.1 ↗
Kingdom:
archaea

Quality

86.4 mean pLDDT

Taxonomy

Sulfolobus_polyhedral_virus_3

TaxID: 3020474

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-55
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.80 54.0 5.18e-01 71.4% 63.2%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.79 55.0 4.79e-01 73.5% 49.3%
1sxjA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.78 59.0 5.18e-01 87.8% 55.6%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.78 53.0 3.19e-01 71.4% 11.6%
3fynA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 65.0 4.63e-01 100.0% 73.0%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.74 54.0 3.47e-01 77.6% 19.9%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.69 58.0 4.53e-01 91.8% 86.3%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 54.0 4.27e-01 91.8% 66.7%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.66 56.0 4.31e-01 98.0% 71.6%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 54.0 4.96e-01 91.8% 78.1%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 52.0 3.08e-01 85.7% 45.6%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 54.0 4.88e-01 98.0% 79.1%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.63 43.0 3.65e-01 75.5% 41.3%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 43.0 3.95e-01 87.8% 56.5%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 51.0 3.87e-01 100.0% 62.6%
1sv0D00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.61 51.0 4.42e-01 98.0% 76.5%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 51.0 4.57e-01 100.0% 90.3%
2jhnA03 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.59 48.0 4.61e-01 98.0% 91.7%
3wz2B00 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.58 47.0 3.02e-01 87.8% 37.3%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 3.53e-01 95.9% 38.0%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 38.0 2.76e-01 79.6% 36.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.74e-01 83.7% 65.6%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.53 42.0 3.94e-01 87.8% 88.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4345919 148.1.3.49 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.85 63.0 5.30e-01 87.8% 48.8%
3421207 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.76 58.0 5.81e-01 81.6% 86.0%
3357976 108.1.1.99 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 0.75 57.0 4.77e-01 81.6% 53.8%
3503735 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.74 55.0 5.06e-01 81.6% 66.2%
3939822 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.72 55.0 3.92e-01 83.7% 31.7%
5067754 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 54.0 5.28e-01 93.9% 74.5%
4281784 108.1.1.104 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_8 0.70 53.0 4.45e-01 83.7% 54.1%
4534722 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.69 52.0 4.50e-01 83.7% 55.0%
3217642 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.69 52.0 4.49e-01 83.7% 57.5%
3277871 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 45.0 4.08e-01 83.7% 51.4%
3948385 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.65 45.0 4.48e-01 71.4% 80.0%
3992615 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.65 54.0 4.52e-01 95.9% 57.8%
4247703 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.64 53.0 4.42e-01 93.9% 61.1%
3590474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 49.0 4.13e-01 87.8% 71.8%
4944988 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.61 54.0 3.43e-01 100.0% 26.7%
4989896 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.57 49.0 2.99e-01 98.0% 45.0%
4999183 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.74e-01 91.8% 86.3%
3388881 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.56 41.0 3.56e-01 81.6% 83.5%
4324444 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.56 45.0 2.93e-01 91.8% 70.6%