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WHA35271.1

Arc-Vir

OQ473816__WHA35271.1__SPV3-ORF41__00040

Identity

Accession:
OQ473816 ↗
Protein ID:
WHA35271.1 ↗
Kingdom:
archaea

Quality

54.0 mean pLDDT

Taxonomy

Sulfolobus_polyhedral_virus_3

TaxID: 3020474

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-89
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.77 49.0 5.96e-01 79.2% 100.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.69 50.0 4.43e-01 75.3% 78.9%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.68 55.0 5.11e-01 87.0% 80.4%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 42.0 5.04e-01 76.6% 100.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.22e-01 79.2% 60.0%
3psfA05 1.10.10.2740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spt6, Death-like domain 0.63 48.0 4.46e-01 83.1% 91.0%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.62 40.0 4.10e-01 80.5% 67.1%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.52e-01 77.9% 73.2%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.60 38.0 3.65e-01 70.1% 54.3%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 33.0 3.53e-01 84.4% 64.2%
1h1oA02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.58 42.0 4.10e-01 76.6% 98.8%
3fdjA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.58 29.0 3.90e-01 89.6% 100.0%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 4.21e-01 81.8% 84.8%
2zm5B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 35.0 2.55e-01 72.7% 20.9%
6cngA02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.55 29.0 3.72e-01 89.6% 100.0%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 35.0 3.63e-01 87.0% 68.1%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 46.0 4.08e-01 100.0% 82.6%
2bmbA02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.54 41.0 2.78e-01 84.4% 95.0%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 46.0 4.04e-01 100.0% 82.1%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.52 38.0 3.40e-01 79.2% 55.8%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.59e-01 100.0% 67.0%
1m70A02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 37.0 3.48e-01 77.9% 75.8%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 37.0 3.33e-01 79.2% 86.0%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 43.0 2.80e-01 100.0% 50.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3970076 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 51.0 6.21e-01 77.9% 100.0%
5029219 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 54.0 6.30e-01 76.6% 98.2%
5064203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 53.0 5.02e-01 79.2% 58.9%
3981939 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.79 53.0 6.09e-01 79.2% 96.4%
4929680 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 49.0 5.39e-01 83.1% 83.3%
3504540 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.75 50.0 5.81e-01 77.9% 96.4%
3987150 101.1.1.382 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DDE_Tnp_IS66 0.75 48.0 5.65e-01 84.4% 100.0%
3590474 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 49.0 4.73e-01 77.9% 60.0%
4027348 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.74 54.0 5.46e-01 79.2% 78.7%
3196401 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 47.0 5.40e-01 79.2% 90.9%
4926838 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.73 50.0 5.38e-01 84.4% 84.6%
3342850 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.73 52.0 5.30e-01 77.9% 77.3%
3956565 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.72 50.0 4.86e-01 79.2% 64.7%
3406651 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.72 53.0 5.36e-01 79.2% 78.7%
3420661 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.72 52.0 5.04e-01 77.9% 68.2%
4016331 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 50.0 5.41e-01 72.7% 86.2%
4008378 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 48.0 5.43e-01 79.2% 96.4%
3934874 101.1.1.396 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Arg_repressor 0.71 47.0 5.35e-01 79.2% 94.5%
4939871 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.71 47.0 4.23e-01 79.2% 49.5%
3984964 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.71 49.0 4.97e-01 79.2% 73.3%
5044657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 46.0 5.06e-01 77.9% 85.0%
3391047 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 46.0 5.12e-01 79.2% 86.7%
4926913 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.70 46.0 3.49e-01 76.6% 29.1%
3266110 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.70 50.0 5.01e-01 77.9% 72.5%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.70 48.0 5.26e-01 79.2% 90.0%
2325472 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.70 47.0 3.91e-01 79.2% 40.2%
4008778 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 47.0 5.27e-01 77.9% 96.4%
4236554 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.70 48.0 5.27e-01 79.2% 91.7%
4034503 101.26.1.1 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › Tex_N 0.70 51.0 5.49e-01 100.0% 90.8%
5032110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 46.0 4.05e-01 79.2% 47.3%
3942167 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.69 45.0 4.97e-01 79.2% 86.7%
4946761 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.69 43.0 4.52e-01 87.0% 70.0%
3928773 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 49.0 5.04e-01 77.9% 77.3%
3877252 101.1.2.306 ↗ alpha arrays › HTH › HTH › winged helix domain › NPR2 0.67 49.0 4.88e-01 80.5% 73.8%
3940641 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.72e-01 84.4% 100.0%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.64 47.0 4.71e-01 79.2% 82.5%
3602903 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.64 45.0 4.78e-01 85.7% 87.7%
5082910 140.1.1.38 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.63 46.0 3.66e-01 76.6% 78.0%
3250611 101.1.2.306 ↗ alpha arrays › HTH › HTH › winged helix domain › NPR2 0.61 44.0 4.54e-01 80.5% 80.0%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.60 54.0 5.23e-01 97.4% 90.6%
3858855 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 43.0 3.44e-01 85.7% 38.1%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.86e-01 89.6% 87.5%
3933997 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.58 43.0 4.23e-01 79.2% 94.1%
4638021 2484.1.1.42 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_2 0.58 42.0 3.00e-01 79.2% 27.4%
5045179 3696.1.1.5 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › Helicase_C_3 0.57 42.0 3.69e-01 77.9% 92.2%
865123 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.55 41.0 3.66e-01 79.2% 83.8%
4927804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.86e-01 100.0% 100.0%
4974851 3716.1.1.4 ↗ alpha arrays › DUF3349 › DUF3349 › DUF3349 › Molybdopterin 0.54 37.0 3.41e-01 80.5% 53.4%
3177280 4.1.1.345 ↗ beta barrels › SH3 › SH3 › SH3 › TYA 0.54 37.0 3.57e-01 71.4% 90.0%
4990831 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 39.0 2.70e-01 81.8% 89.8%
D2 high residues 97-152
PDB