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OQ504958.1__WID41946.1__X__00028

Bact-Vir

OQ504958.1__WID41946.1__X__00028

Identity

Accession:
OQ504958 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05930.19 best Phage_AlpA 48.0 1.30e-12 90.7% 94.1%
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.80 71.0 6.45e-01 100.0% 94.4%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.78 70.0 5.32e-01 100.0% 52.1%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.78 68.0 5.35e-01 100.0% 56.6%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 67.0 5.01e-01 100.0% 48.6%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 67.0 6.13e-01 100.0% 94.5%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 65.0 5.00e-01 100.0% 50.8%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 67.0 5.43e-01 100.0% 68.7%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.70 57.0 5.15e-01 94.4% 72.2%
1y6uA01 3.90.105.50 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › 0.67 52.0 5.45e-01 88.9% 98.0%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 56.0 5.20e-01 100.0% 85.7%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.62 49.0 4.13e-01 96.3% 62.0%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 48.0 3.73e-01 94.4% 41.0%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.24e-01 96.3% 65.6%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.87e-01 75.9% 54.7%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.06e-01 88.9% 58.0%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.10e-01 94.4% 64.0%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.55e-01 81.5% 43.9%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.20e-01 92.6% 76.8%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 3.67e-01 100.0% 39.3%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.57 42.0 2.54e-01 81.5% 40.3%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.94e-01 92.6% 70.8%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.59e-01 75.9% 54.7%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.99e-01 87.0% 69.0%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.94e-01 92.6% 72.9%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.46e-01 98.1% 39.7%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.90e-01 87.0% 79.2%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.88e-01 87.0% 76.7%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.92e-01 98.1% 64.7%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.82e-01 94.4% 71.6%
4wriA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 44.0 3.17e-01 100.0% 33.2%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 30.0 3.03e-01 100.0% 51.9%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 45.0 3.02e-01 100.0% 71.0%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 2.90e-01 100.0% 29.2%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.53 43.0 3.94e-01 100.0% 74.1%
1t3aA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.52 40.0 2.46e-01 87.0% 36.8%
2ganA02 6.20.300.10 Special › Other non-globular › CbiD-like › 0.52 32.0 3.54e-01 90.7% 84.6%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.52 40.0 3.74e-01 100.0% 68.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.68e-01 96.3% 75.9%
5by7A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 42.0 2.97e-01 100.0% 81.7%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.13e-01 100.0% 43.5%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 2.64e-01 94.4% 82.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980161 101.1.9.45 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.94 82.0 8.19e-01 92.6% 90.9%
3943951 101.1.9.45 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_AlpA 0.91 83.0 7.71e-01 98.1% 81.5%
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.86 77.0 7.65e-01 98.1% 98.2%
3289439 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.85 74.0 7.37e-01 98.1% 94.5%
3952885 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.83 69.0 7.08e-01 94.4% 100.0%
4672676 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 73.0 5.35e-01 100.0% 49.3%
3954861 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.82 71.0 7.15e-01 98.1% 96.4%
5047649 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.82 67.0 6.97e-01 94.4% 100.0%
3288603 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 71.0 6.35e-01 98.1% 90.7%
4197446 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 71.0 5.28e-01 100.0% 49.6%
4932995 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 66.0 6.86e-01 94.4% 100.0%
3281621 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 69.0 6.89e-01 96.3% 94.5%
171609 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 71.0 5.28e-01 100.0% 51.1%
3282573 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.80 71.0 5.38e-01 100.0% 53.6%
3280706 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.80 71.0 6.22e-01 100.0% 83.7%
2967124 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 68.0 6.31e-01 100.0% 75.4%
3965196 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 70.0 6.81e-01 100.0% 93.3%
4031948 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.79 69.0 5.44e-01 100.0% 58.3%
3970754 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 70.0 6.15e-01 100.0% 85.0%
3288205 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.79 70.0 6.15e-01 100.0% 83.7%
3945289 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.79 69.0 5.27e-01 100.0% 54.4%
4096952 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.79 70.0 5.45e-01 100.0% 58.3%
3948487 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.78 69.0 5.15e-01 100.0% 50.4%
5000254 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 65.0 6.67e-01 94.4% 100.0%
3589820 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 67.0 5.15e-01 98.1% 50.4%
3290892 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 68.0 5.51e-01 100.0% 63.8%
5007668 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 68.0 5.21e-01 100.0% 52.8%
3286164 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.78 65.0 4.27e-01 94.4% 28.7%
3286117 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.77 69.0 5.22e-01 100.0% 52.8%
1394838 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 67.0 5.01e-01 100.0% 48.6%
4031764 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.77 67.0 4.95e-01 98.1% 45.7%
3960386 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 64.0 6.25e-01 94.4% 95.0%
2325046 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 66.0 5.16e-01 100.0% 61.7%
4139250 101.1.9.30 alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N 0.76 66.0 5.14e-01 100.0% 92.5%
3957229 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 64.0 6.22e-01 96.3% 93.3%
3949463 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 66.0 5.16e-01 100.0% 59.1%
None 0.74 65.0 5.99e-01 100.0% 95.7%
4004621 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 51.0 5.07e-01 81.5% 74.5%
3587522 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 56.0 5.23e-01 98.1% 77.1%
3691686 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.62 52.0 3.88e-01 96.3% 38.6%
5049563 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.61 50.0 2.90e-01 100.0% 9.6%
3179612 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 46.0 4.39e-01 96.3% 71.4%
4943612 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 3.86e-01 92.6% 41.7%
3528125 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 4.91e-01 87.0% 94.0%
3217231 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.36e-01 100.0% 72.3%
5034272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.06e-01 87.0% 57.6%
3236695 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.71e-01 94.4% 69.6%
5052974 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.19e-01 92.6% 70.7%
4426275 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 3.52e-01 94.4% 39.3%
5030617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.56e-01 85.2% 100.0%
4008626 101.1.2.297 alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.56 47.0 3.63e-01 100.0% 58.5%
5077868 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.24e-01 94.4% 81.5%
4953298 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.55 45.0 3.51e-01 94.4% 40.0%
4461479 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.55 44.0 3.15e-01 94.4% 91.9%
5020992 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.55 46.0 3.68e-01 94.4% 50.0%
5012052 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.55 45.0 3.48e-01 94.4% 63.1%
3820897 109.4.1.1682 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PHM7_cyt 0.54 30.0 2.82e-01 98.1% 41.4%
9289 2003.1.2.20 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.54 45.0 3.16e-01 100.0% 39.1%
5017852 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.97e-01 94.4% 73.3%
4395667 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.88e-01 94.4% 67.5%
5056734 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.58e-01 100.0% 46.1%
3789700 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 43.0 3.09e-01 100.0% 86.2%
3481198 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 42.0 2.93e-01 98.1% 76.1%
5046780 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.52 39.0 3.47e-01 87.0% 53.3%
3623496 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.51 40.0 2.85e-01 96.3% 84.9%
5055105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.59e-01 87.0% 65.7%
5078761 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.51 41.0 3.41e-01 100.0% 54.8%
5044828 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.62e-01 100.0% 65.6%
3397637 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.50 40.0 2.70e-01 90.7% 33.2%
3539257 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.50 40.0 2.75e-01 90.7% 36.7%