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OQ504960.1__WID42015.1__X__00043

Bact-Vir

OQ504960.1__WID42015.1__X__00043

Identity

Accession:
OQ504960 ↗
Kingdom:
phage

Quality

77.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Pseudomonas_phage_ZQG1

TaxID: 3032261

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-108
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 38.0 4.74e-01 72.3% 89.5%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 58.0 4.35e-01 98.5% 89.0%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.48e-01 95.4% 92.4%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.79e-01 73.8% 81.0%
1wvhA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 3.85e-01 78.5% 74.2%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.64 46.0 3.14e-01 76.9% 25.2%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 42.0 3.44e-01 75.4% 36.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.24e-01 72.3% 75.4%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.61 44.0 3.55e-01 76.9% 52.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.29e-01 72.3% 79.4%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 45.0 3.54e-01 78.5% 39.3%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 49.0 3.38e-01 95.4% 28.5%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 3.62e-01 75.4% 51.4%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.59 43.0 3.54e-01 76.9% 54.3%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 45.0 3.77e-01 90.8% 73.4%
3ednA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 46.0 3.48e-01 89.2% 39.6%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 49.0 3.49e-01 98.5% 70.9%
3qugA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.88e-01 90.8% 98.2%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.10e-01 80.0% 30.1%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.56 40.0 3.33e-01 78.5% 44.8%
1l0qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.03e-01 84.6% 41.1%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 39.0 4.33e-01 75.4% 96.1%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.39e-01 96.9% 40.8%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 36.0 3.08e-01 70.8% 43.8%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.54 39.0 3.41e-01 80.0% 52.3%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.54 44.0 3.61e-01 92.3% 72.1%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 3.14e-01 84.6% 84.0%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.33e-01 83.1% 46.8%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.23e-01 93.8% 35.9%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.49e-01 83.1% 59.0%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.30e-01 92.3% 86.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 37.0 3.87e-01 83.1% 94.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.60e-01 76.9% 75.8%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 2.98e-01 86.2% 60.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 38.0 2.60e-01 83.1% 45.8%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 3.08e-01 90.8% 63.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269121 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.74 46.0 3.76e-01 70.8% 36.4%
3221229 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 46.0 5.31e-01 70.8% 100.0%
3935147 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.68 48.0 2.91e-01 72.3% 68.2%
3307397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 47.0 3.68e-01 72.3% 36.4%
3997580 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.68 60.0 4.40e-01 100.0% 82.3%
3326221 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 46.0 4.15e-01 73.8% 54.7%
3596328 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.67 58.0 4.35e-01 100.0% 85.9%
3496242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 42.0 4.67e-01 72.3% 86.0%
4661118 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.64 42.0 3.46e-01 70.8% 35.2%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 45.0 4.55e-01 73.8% 78.5%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 45.0 4.56e-01 73.8% 83.1%
4317931 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.64 48.0 4.49e-01 100.0% 64.7%
3252404 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.62 49.0 4.31e-01 100.0% 57.9%
5038162 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.61 44.0 3.23e-01 76.9% 92.0%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.60 45.0 4.04e-01 80.0% 81.1%
3251342 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 41.0 3.37e-01 70.8% 38.3%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.59 43.0 3.94e-01 78.5% 64.4%
3402087 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.58 48.0 3.67e-01 98.5% 71.8%
3645341 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.57 44.0 3.36e-01 86.2% 46.1%
3993690 216.1.1.35 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Rgr-1_C 0.57 50.0 3.38e-01 100.0% 34.2%
3594465 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 4.09e-01 92.3% 83.6%
5047301 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.91e-01 83.1% 85.6%
3683658 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.56 39.0 2.44e-01 72.3% 28.1%
3651732 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.56 38.0 2.55e-01 72.3% 36.3%
5040652 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.56 45.0 3.33e-01 93.8% 62.4%
3663874 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.56 38.0 2.38e-01 72.3% 25.0%
3650579 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.55 44.0 3.59e-01 95.4% 93.6%
5050697 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.54 37.0 4.10e-01 76.9% 90.0%
5037441 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.52e-01 84.6% 66.4%
3610972 330.1.1.22 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 0.54 36.0 2.99e-01 70.8% 39.2%
169663 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.53 47.0 3.56e-01 100.0% 77.7%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 37.0 3.06e-01 72.3% 100.0%
3602029 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.53 45.0 3.33e-01 100.0% 71.8%
3237854 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.53 44.0 3.75e-01 98.5% 76.5%
3824181 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.52 37.0 3.85e-01 78.5% 96.7%
3487450 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 44.0 3.48e-01 98.5% 60.7%
3622132 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 46.0 3.61e-01 100.0% 90.0%
3952888 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.52 40.0 3.16e-01 92.3% 64.7%
3430247 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.52 38.0 3.31e-01 83.1% 49.0%
5023443 330.4.1.0 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.52 35.0 3.56e-01 70.8% 70.8%
3931868 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.52 38.0 3.29e-01 76.9% 81.0%
3282536 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 35.0 3.35e-01 72.3% 71.2%
4797813 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.51 37.0 3.87e-01 83.1% 94.7%
3927151 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 36.0 2.58e-01 80.0% 22.0%