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OQ504960.1__WID42017.1__X__00045

Bact-Vir

OQ504960.1__WID42017.1__X__00045

Identity

Accession:
OQ504960 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-82
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 53.0 4.47e-01 76.6% 71.1%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.73 66.0 5.81e-01 100.0% 90.9%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 62.0 5.29e-01 100.0% 88.6%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 56.0 4.87e-01 89.6% 91.6%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.69 50.0 4.80e-01 76.6% 97.7%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.68 43.0 4.18e-01 77.9% 57.0%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 50.0 4.16e-01 77.9% 100.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 51.0 4.22e-01 79.2% 97.8%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.68 60.0 5.09e-01 100.0% 83.8%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 49.0 4.17e-01 76.6% 61.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 49.0 4.06e-01 77.9% 97.1%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.65 41.0 3.93e-01 71.4% 55.1%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 48.0 3.09e-01 76.6% 25.3%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.65 51.0 4.11e-01 85.7% 92.7%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 4.04e-01 76.6% 59.5%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.64 46.0 4.47e-01 75.3% 96.4%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.63 56.0 3.89e-01 100.0% 98.5%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.63 48.0 3.27e-01 83.1% 44.3%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 47.0 3.43e-01 79.2% 80.4%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 3.09e-01 81.8% 54.4%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.62 42.0 4.13e-01 70.1% 93.9%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 45.0 2.94e-01 80.5% 49.2%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 39.0 3.85e-01 72.7% 61.2%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 44.0 4.37e-01 83.1% 76.2%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 4.50e-01 100.0% 76.4%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.58 47.0 3.56e-01 90.9% 95.9%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.57 49.0 3.84e-01 100.0% 96.1%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 47.0 4.02e-01 93.5% 80.6%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.56 48.0 4.38e-01 98.7% 96.2%
2f51A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 4.07e-01 100.0% 63.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.93e-01 72.7% 76.1%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 37.0 3.25e-01 76.6% 47.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.06e-01 93.5% 91.5%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.54 43.0 3.10e-01 89.6% 87.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 41.0 2.93e-01 85.7% 83.9%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 45.0 3.94e-01 98.7% 93.2%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 36.0 2.77e-01 74.0% 43.7%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 2.94e-01 98.7% 75.3%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 39.0 2.81e-01 87.0% 96.9%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 43.0 3.04e-01 97.4% 90.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627627 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.77 56.0 4.50e-01 76.6% 49.0%
3511356 4056.1.1.1 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6 0.74 55.0 4.92e-01 77.9% 83.8%
3870514 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.73 53.0 4.65e-01 76.6% 59.1%
3255030 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.73 53.0 4.52e-01 76.6% 56.8%
5044967 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.73 48.0 4.56e-01 79.2% 57.8%
3390648 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 53.0 4.55e-01 76.6% 59.2%
3389929 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 53.0 4.30e-01 76.6% 62.1%
5022763 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 56.0 3.67e-01 84.4% 36.9%
4949569 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.71 46.0 4.36e-01 79.2% 56.7%
1005444 295.2.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › Outer surface protein E › Outer surface protein E › OspE 0.70 52.0 4.17e-01 79.2% 70.2%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 59.0 4.85e-01 93.5% 77.9%
3706798 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 50.0 3.26e-01 76.6% 28.2%
3266642 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 50.0 3.97e-01 76.6% 48.4%
3925754 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.69 44.0 3.61e-01 76.6% 37.0%
6628 241.1.1.3 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.68 60.0 5.09e-01 100.0% 83.8%
3511087 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.68 49.0 3.14e-01 76.6% 27.8%
3744121 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.68 49.0 3.10e-01 76.6% 22.3%
169853 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.67 43.0 4.20e-01 79.2% 58.8%
3986253 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.67 56.0 4.90e-01 93.5% 88.3%
3591236 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 52.0 2.99e-01 81.8% 23.9%
3276429 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.66 50.0 3.29e-01 79.2% 39.0%
3936285 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 54.0 3.68e-01 88.3% 66.5%
3958057 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 4.11e-01 79.2% 67.4%
3440815 5.1.11.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.65 50.0 3.27e-01 81.8% 47.6%
3496494 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 48.0 3.08e-01 77.9% 98.3%
3905525 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 4.34e-01 83.1% 70.0%
3941131 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.65 49.0 3.19e-01 81.8% 35.7%
3611076 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 47.0 3.02e-01 76.6% 27.1%
3458192 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.64 50.0 3.35e-01 84.4% 78.7%
4031110 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 3.96e-01 76.6% 56.0%
5022797 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.64 58.0 4.11e-01 97.4% 78.6%
3480535 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 4.17e-01 76.6% 61.0%
3666734 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.63 53.0 4.47e-01 92.2% 97.7%
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 46.0 3.01e-01 76.6% 20.4%
3462291 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.63 49.0 3.30e-01 84.4% 76.3%
4466450 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.63 55.0 4.59e-01 100.0% 82.9%
3630423 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 45.0 4.36e-01 75.3% 81.2%
4021102 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 44.0 2.71e-01 74.0% 21.0%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.62 40.0 2.95e-01 76.6% 23.8%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.62 45.0 4.42e-01 87.0% 70.6%
3445792 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 48.0 3.11e-01 85.7% 46.8%
4951147 881.4.1.0 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.62 40.0 3.50e-01 76.6% 42.5%
3615586 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.61 45.0 2.87e-01 79.2% 51.9%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 44.0 3.17e-01 76.6% 59.6%
3167693 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 2.82e-01 81.8% 25.1%
3185010 12.3.1.28 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_92N 0.61 45.0 3.11e-01 79.2% 90.5%
3989353 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.61 49.0 4.19e-01 88.3% 96.8%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 47.0 4.44e-01 85.7% 74.7%
3311716 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.60 50.0 4.26e-01 92.2% 96.9%
4975535 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.60 44.0 4.39e-01 98.7% 75.0%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.60 52.0 4.01e-01 97.4% 86.3%
4029617 5.1.11.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DUF7899 0.59 48.0 2.98e-01 88.3% 30.4%
3198094 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.59 44.0 4.36e-01 83.1% 76.2%
3742310 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.59 44.0 2.95e-01 79.2% 48.2%
3269700 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.58 44.0 2.96e-01 80.5% 43.7%
3925491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 38.0 2.79e-01 76.6% 23.6%
4256135 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.56 45.0 3.32e-01 85.7% 81.6%
1870993 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.56 44.0 3.30e-01 87.0% 59.7%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 39.0 2.78e-01 76.6% 23.1%
3903662 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.96e-01 80.5% 81.2%
3260205 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.54 44.0 3.05e-01 97.4% 45.6%
3929502 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 44.0 4.16e-01 89.6% 75.5%
3485085 223.3.1.0 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.52 44.0 3.54e-01 98.7% 75.6%