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OQ504961.1__WID42083.1__X__00021

Bact-Vir

OQ504961.1__WID42083.1__X__00021

Identity

Accession:
OQ504961 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_ZRG1

TaxID: 3032262

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.73e-01 100.0% 88.2%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 44.0 4.39e-01 98.2% 78.6%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.65e-01 90.9% 93.3%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 45.0 4.55e-01 90.9% 86.0%
2zvbA01 3.40.1010.10 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain 0.56 40.0 3.17e-01 80.0% 94.7%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 43.0 4.19e-01 90.9% 75.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.15e-01 90.9% 72.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 43.0 4.36e-01 90.9% 89.1%
3kioC01 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.54 47.0 4.00e-01 100.0% 83.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 4.17e-01 92.7% 85.5%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.51e-01 100.0% 84.7%
3pufL00 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.53 46.0 3.64e-01 100.0% 64.7%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.53 43.0 3.94e-01 96.4% 77.2%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 3.93e-01 92.7% 81.4%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.52 43.0 3.90e-01 100.0% 83.1%
1se9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 44.0 3.68e-01 100.0% 83.2%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 3.89e-01 100.0% 98.8%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 43.0 3.76e-01 100.0% 83.5%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.51 35.0 3.36e-01 90.9% 58.9%
2kkcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 41.0 3.53e-01 100.0% 94.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082482 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.65 52.0 4.79e-01 92.7% 77.3%
185266 3174.2.1.1 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA 0.62 46.0 4.71e-01 100.0% 86.5%
5035867 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.60 49.0 4.93e-01 100.0% 94.5%
4502854 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.60 43.0 3.96e-01 76.4% 68.6%
5015989 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.60 47.0 4.75e-01 98.2% 90.9%
4964644 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 46.0 4.67e-01 98.2% 90.9%
4968500 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 47.0 4.61e-01 100.0% 82.5%
4972340 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.59 38.0 3.58e-01 87.3% 55.4%
137916 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.59 47.0 4.53e-01 90.9% 86.2%
4950806 4.6.1.8 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › WH_Lhr 0.58 46.0 4.63e-01 100.0% 90.9%
4956032 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.58 46.0 4.54e-01 100.0% 85.0%
3960335 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.58 48.0 4.49e-01 98.2% 75.7%
4956395 239.1.1.7 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH 0.57 46.0 4.64e-01 98.2% 94.5%
3620519 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 49.0 4.30e-01 100.0% 88.2%
3214149 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 44.0 4.27e-01 90.9% 75.4%
4962605 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.56 45.0 4.01e-01 100.0% 84.2%
3832573 221.1.1.235 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Zn_SUZ12 0.56 47.0 4.44e-01 100.0% 91.4%
4934433 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.56 45.0 4.53e-01 98.2% 94.5%
3443390 221.1.1.28 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SOK 0.56 47.0 3.94e-01 100.0% 92.4%
5048201 239.1.1.5 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.56 47.0 3.96e-01 100.0% 81.0%
3554960 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.56 38.0 2.39e-01 72.7% 86.3%
4936305 375.1.1.332 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › WH_Lhr 0.55 44.0 4.44e-01 98.2% 92.7%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.27e-01 92.7% 81.5%
137947 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.54 43.0 4.08e-01 90.9% 83.6%
3717225 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 45.0 3.78e-01 100.0% 94.0%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.53 42.0 4.02e-01 90.9% 80.0%
2921155 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.53 42.0 3.39e-01 94.5% 86.4%
4295923 11.1.4.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.52 44.0 3.95e-01 100.0% 98.8%
164975 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.52 43.0 3.91e-01 100.0% 84.1%
3745675 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 42.0 3.54e-01 100.0% 86.4%
3599539 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.51 41.0 3.09e-01 98.2% 84.8%
3264605 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 44.0 4.02e-01 100.0% 93.3%
3410509 221.1.1.60 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_5 0.51 41.0 3.74e-01 100.0% 90.6%
4249669 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 45.0 3.76e-01 100.0% 97.9%
3580190 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.50 42.0 3.64e-01 100.0% 81.1%