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OQ504961.1__WID42118.1__X__00056

Bact-Vir

OQ504961.1__WID42118.1__X__00056

Identity

Accession:
OQ504961 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 67.0 5.50e-01 100.0% 58.3%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 64.0 5.50e-01 100.0% 66.0%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 64.0 5.27e-01 100.0% 59.4%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.07e-01 73.3% 95.7%
4n21E00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 56.0 4.59e-01 100.0% 64.5%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.65 58.0 5.23e-01 98.3% 98.8%
3sfvB01 3.30.450.390 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 58.0 4.34e-01 100.0% 96.5%
5k8bA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 40.0 2.99e-01 88.3% 26.2%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.64 56.0 4.55e-01 100.0% 86.1%
3dgpA00 3.30.70.2610 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 32.0 3.19e-01 83.3% 43.5%
1jp4A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 54.0 3.88e-01 98.3% 96.5%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.61 52.0 3.22e-01 100.0% 16.6%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 3.81e-01 83.3% 65.8%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.61 43.0 4.49e-01 85.0% 78.9%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 45.0 2.69e-01 80.0% 12.6%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.59 53.0 3.63e-01 100.0% 31.2%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 51.0 4.02e-01 100.0% 78.1%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.37e-01 81.7% 52.1%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.59 51.0 4.04e-01 100.0% 57.5%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.58 49.0 3.47e-01 96.7% 29.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.18e-01 100.0% 99.0%
3pm0A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 48.0 2.91e-01 96.7% 36.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.21e-01 95.0% 89.2%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.71e-01 100.0% 49.5%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.57 48.0 2.86e-01 95.0% 13.4%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.57 50.0 4.36e-01 100.0% 64.9%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.56 46.0 3.79e-01 96.7% 47.2%
5afuV00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.55 48.0 3.55e-01 100.0% 97.0%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.51e-01 88.3% 54.7%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 45.0 2.79e-01 100.0% 16.8%
2jokA01 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.53 45.0 3.27e-01 96.7% 66.9%
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 47.0 3.16e-01 98.3% 88.6%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 3.67e-01 100.0% 77.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.58e-01 83.3% 88.1%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.66e-01 100.0% 54.4%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.52 39.0 2.89e-01 100.0% 32.7%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 41.0 3.50e-01 100.0% 54.3%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.32e-01 93.3% 71.4%
2yxoB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 45.0 2.95e-01 98.3% 25.3%
3k8pC01 1.20.58.1440 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 45.0 3.79e-01 100.0% 61.0%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.51 42.0 4.29e-01 100.0% 98.3%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 41.0 2.93e-01 98.3% 53.8%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.38e-01 93.3% 49.5%
1mkyA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.68e-01 75.0% 51.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987009 3837.1.1.1 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.85 78.0 5.70e-01 100.0% 40.7%
4321934 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.80 63.0 4.50e-01 100.0% 31.2%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 70.0 5.30e-01 100.0% 50.8%
5036014 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 70.0 5.87e-01 100.0% 64.2%
3214720 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.75 70.0 5.84e-01 100.0% 69.5%
5066959 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 68.0 4.54e-01 100.0% 27.9%
5028061 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 68.0 5.86e-01 100.0% 67.8%
4940192 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.73 67.0 5.31e-01 100.0% 53.5%
3493963 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 68.0 5.56e-01 100.0% 61.0%
4025349 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.71 67.0 5.01e-01 100.0% 72.3%
4636267 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.69 61.0 4.30e-01 93.3% 37.5%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 63.0 5.07e-01 100.0% 97.3%
3692753 5086.1.1.12 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 0.68 60.0 4.47e-01 100.0% 44.7%
4994431 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.67 36.0 3.59e-01 81.7% 46.2%
3703582 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.67 61.0 4.71e-01 100.0% 53.6%
3260123 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.66 59.0 4.12e-01 100.0% 34.7%
4954786 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.65 60.0 5.27e-01 100.0% 87.1%
3254236 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 55.0 4.65e-01 100.0% 70.5%
3287378 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.64 55.0 3.66e-01 100.0% 53.5%
3980132 823.1.1.1 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › gpW 0.64 54.0 5.60e-01 95.0% 100.0%
4996058 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 49.0 4.06e-01 86.7% 73.0%
3420307 192.8.1.248 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.63 55.0 3.51e-01 100.0% 23.7%
4439546 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.63 56.0 3.84e-01 100.0% 30.0%
3359387 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.62 55.0 3.27e-01 100.0% 13.8%
4385210 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.62 54.0 3.84e-01 100.0% 33.5%
3806737 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.61 53.0 4.10e-01 100.0% 42.9%
4203057 101.1.2.561 alpha arrays › HTH › HTH › winged helix domain › PF28826 0.61 54.0 4.04e-01 100.0% 40.0%
3598612 220.1.1.230 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.61 41.0 3.52e-01 100.0% 46.7%
3638065 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.60 52.0 4.04e-01 98.3% 80.0%
3613028 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.59 50.0 4.12e-01 100.0% 85.2%
3968902 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.59 50.0 3.39e-01 100.0% 28.7%
3369452 310.2.1.38 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Hobbit 0.58 51.0 4.48e-01 100.0% 75.6%
3661733 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.58 50.0 3.66e-01 100.0% 35.9%
3726808 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.58 48.0 3.55e-01 100.0% 42.8%
3988581 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 49.0 4.40e-01 100.0% 67.8%
3201136 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 48.0 3.10e-01 100.0% 19.0%
3719744 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 35.0 3.07e-01 80.0% 41.1%
5579 306.8.1.1 a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp 0.57 50.0 4.36e-01 100.0% 64.9%
5038557 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.57 47.0 4.04e-01 95.0% 86.0%
4967161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 3.01e-01 93.3% 45.0%
3471523 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.55 49.0 3.17e-01 100.0% 28.0%
4869676 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 40.0 2.73e-01 100.0% 22.4%
3876302 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.53 42.0 3.42e-01 90.0% 48.6%
2138587 2498.1.1.23 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.52 45.0 2.60e-01 100.0% 17.9%
4999908 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.52 44.0 4.30e-01 98.3% 84.6%
4593130 601.7.1.40 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.52 42.0 2.68e-01 96.7% 17.0%
3919851 109.4.1.335 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SEN1_N 0.52 44.0 2.60e-01 96.7% 11.8%
3400082 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.51 42.0 3.66e-01 96.7% 86.0%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.67e-01 90.0% 67.8%
4968601 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 47.0 3.81e-01 100.0% 72.4%
3911302 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 38.0 3.78e-01 86.7% 76.9%
5029366 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.66e-01 90.0% 100.0%