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OQ504979.1__WLW36918.1__X__00142

Bact-Vir

OQ504979.1__WLW36918.1__X__00142

Identity

Accession:
OQ504979 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Tefnutvirus› Synechococcus_phage_S-8S29

TaxID: 3038205

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 300-407
PDB
Domain cluster: rep: NC_006883.2__YP_214260.1__PSSM2_028__00024__D138-240
D2 medium residues 1-68
PDB
Domain cluster: rep: IMGVR_UViG_3300026212_000163-3300026212-Ga0208409_10047674__D1-54
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07880.17 best T4_gp9_10_N 40.8 3.70e-10 97.1% 32.6%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1avyB00 1.20.5.320 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 6-Phosphogluconate Dehydrogenase, domain 3 0.69 44.0 4.88e-01 79.4% 83.3%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 39.0 3.12e-01 94.1% 32.4%
6gszA04 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.60 40.0 2.55e-01 86.8% 13.4%
1ox3A00 1.20.5.320 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 6-Phosphogluconate Dehydrogenase, domain 3 0.52 47.0 4.03e-01 100.0% 75.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5007153 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 40.0 3.35e-01 70.6% 82.5%
3451778 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.59 42.0 3.32e-01 100.0% 37.0%
2409510 213.1.1.71 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF29847 0.51 44.0 2.75e-01 94.1% 80.6%
D3 medium residues 225-263
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k7cA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 40.0 2.61e-01 82.1% 49.8%
3w3wA02 6.10.140.1700 Special › Helix non-globular › Helix Hairpins › 0.53 34.0 3.60e-01 94.9% 80.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028610 101.1.2.123 ↗ alpha arrays › HTH › HTH › winged helix domain › Paf67 0.56 43.0 3.33e-01 89.7% 81.0%
4265935 101.1.2.123 ↗ alpha arrays › HTH › HTH › winged helix domain › Paf67 0.55 44.0 3.62e-01 100.0% 72.9%
3430287 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 45.0 2.74e-01 100.0% 83.6%
3224830 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 36.0 2.12e-01 74.4% 6.6%
4019519 101.1.2.123 ↗ alpha arrays › HTH › HTH › winged helix domain › Paf67 0.54 44.0 3.33e-01 100.0% 52.4%
3591791 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.52 38.0 2.38e-01 94.9% 65.7%
3990730 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.51 36.0 2.20e-01 100.0% 86.6%
3733428 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.50 37.0 2.66e-01 87.2% 50.0%