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OQ504982.1__WLW37468.1__X__00051
Bact-VirOQ504982.1__WLW37468.1__X__00051
Identity
- Accession:
- OQ504982 ↗
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Kanaloavirus›
Synechococcus_phage_S-8S53
TaxID: 3038206
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-55
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_2946_prodigal-single.1__X__X__00006__D6-50
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.69 | 60.0 | 4.97e-01 | 100.0% | 69.4% |
| 3fhlA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.66 | 56.0 | 3.80e-01 | 100.0% | 67.4% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.64 | 52.0 | 3.90e-01 | 100.0% | 35.5% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.64 | 50.0 | 4.71e-01 | 89.4% | 71.7% |
| 2o18A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.64 | 52.0 | 3.22e-01 | 97.9% | 38.1% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.62 | 52.0 | 3.50e-01 | 100.0% | 69.3% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 53.0 | 3.78e-01 | 100.0% | 36.5% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 51.0 | 4.31e-01 | 100.0% | 96.6% |
| 4dapA02 | 3.40.1350.60 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 46.0 | 3.33e-01 | 87.2% | 45.4% |
| 5mgyA00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.60 | 49.0 | 3.06e-01 | 97.9% | 49.8% |
| 2bjfA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.60 | 49.0 | 3.08e-01 | 100.0% | 94.3% |
| 2oc3A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.60 | 44.0 | 2.80e-01 | 83.0% | 15.4% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.59 | 48.0 | 2.95e-01 | 95.7% | 36.6% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 40.0 | 3.66e-01 | 70.2% | 59.0% |
| 3p51A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 48.0 | 3.54e-01 | 100.0% | 37.9% |
| 2pvaA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.58 | 48.0 | 2.89e-01 | 95.7% | 35.0% |
| 2v73A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 50.0 | 3.41e-01 | 100.0% | 32.8% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.58 | 49.0 | 3.96e-01 | 97.9% | 61.7% |
| 5ocqA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 49.0 | 3.06e-01 | 100.0% | 25.8% |
| 1a2pA00 | 3.10.450.30 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases | 0.57 | 45.0 | 3.64e-01 | 97.9% | 69.4% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 45.0 | 2.95e-01 | 100.0% | 49.4% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 3.21e-01 | 87.2% | 50.0% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 48.0 | 3.27e-01 | 100.0% | 83.8% |
| 4l2iA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 44.0 | 3.03e-01 | 100.0% | 62.9% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.54 | 40.0 | 3.58e-01 | 89.4% | 54.3% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.54 | 35.0 | 3.88e-01 | 76.6% | 86.5% |
| 6ruiB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.54 | 40.0 | 2.84e-01 | 85.1% | 27.5% |
| 3zq4A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 43.0 | 2.72e-01 | 97.9% | 39.4% |
| 4hjhA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 45.0 | 3.61e-01 | 100.0% | 50.5% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.53 | 43.0 | 2.95e-01 | 100.0% | 40.3% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 45.0 | 3.10e-01 | 100.0% | 41.6% |
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.53 | 44.0 | 3.99e-01 | 93.6% | 72.3% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.53 | 36.0 | 3.55e-01 | 72.3% | 86.5% |
| 1l1jA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 40.0 | 3.08e-01 | 91.5% | 58.5% |
| 2vf8B04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 39.0 | 2.69e-01 | 89.4% | 84.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3919375 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.60 | 47.0 | 3.86e-01 | 93.6% | 48.0% |
| 3649906 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.59 | 40.0 | 3.23e-01 | 74.5% | 34.7% |
| 3434864 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.59 | 49.0 | 4.05e-01 | 100.0% | 52.6% |
| 3283255 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 49.0 | 4.03e-01 | 100.0% | 78.9% |
| 349797 | 210.1.2.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH | 0.59 | 49.0 | 3.03e-01 | 100.0% | 91.2% |
| 3994625 | 5.1.4.30 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL | 0.59 | 46.0 | 2.88e-01 | 100.0% | 23.4% |
| 3201539 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 42.0 | 2.80e-01 | 87.2% | 18.0% |
| 3659455 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.59 | 51.0 | 3.65e-01 | 95.7% | 39.2% |
| 3679931 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.58 | 50.0 | 3.31e-01 | 100.0% | 23.3% |
| 3776866 | 12.5.1.15 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FAM171A1-2-B_N | 0.58 | 48.0 | 3.81e-01 | 100.0% | 90.0% |
| 5036069 | 4004.1.1.0 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like | 0.58 | 40.0 | 2.99e-01 | 78.7% | 54.5% |
| 3227822 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.57 | 41.0 | 2.73e-01 | 80.9% | 21.4% |
| 3501309 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.57 | 46.0 | 3.45e-01 | 100.0% | 35.0% |
| 3972281 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.57 | 39.0 | 3.58e-01 | 100.0% | 53.8% |
| 3315025 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.56 | 41.0 | 3.58e-01 | 87.2% | 48.8% |
| 4525386 | 210.1.2.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH | 0.53 | 43.0 | 2.73e-01 | 100.0% | 33.1% |
| 4029821 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.52 | 38.0 | 2.50e-01 | 83.0% | 17.8% |
| 3717027 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.52 | 42.0 | 2.99e-01 | 100.0% | 33.1% |
| 3583597 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 42.0 | 3.54e-01 | 97.9% | 62.2% |
| 363983 | 234.1.1.1 ↗ | a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease | 0.50 | 44.0 | 3.50e-01 | 100.0% | 62.1% |
D2
medium
residues 141-195
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8N00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.52 | 37.0 | 2.62e-01 | 76.4% | 87.1% |