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OQ504984.1__WLW37998.1__X__00119

Bact-Vir

OQ504984.1__WLW37998.1__X__00119

Identity

Accession:
OQ504984 ↗
Kingdom:
phage

Quality

77.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Kanaloavirus› Synechococcus_phage_S-8S56

TaxID: 3038208

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 40-182
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xw3A01 3.90.1530.10 Alpha Beta › Alpha-Beta Complex › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, ParB domain 0.68 44.0 5.17e-01 70.6% 95.8%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 22.0 2.60e-01 80.4% 49.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948471 876.1.1.1 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParBc 0.65 47.0 5.19e-01 78.3% 94.8%
D2 medium residues 202-252
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hd5A02 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.52 44.0 2.94e-01 96.1% 85.8%
3pdiH04 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.51 45.0 3.39e-01 100.0% 74.4%
D3 medium residues 253-384
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zp2A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 38.0 4.08e-01 75.8% 68.7%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 40.0 4.51e-01 76.5% 86.6%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 40.0 4.66e-01 84.1% 97.7%
5xnyA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.58 37.0 4.05e-01 70.5% 79.4%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.57 37.0 4.01e-01 82.6% 79.1%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.56 47.0 4.52e-01 92.4% 96.2%
4nxtA01 1.10.1410.40 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.56 46.0 4.55e-01 90.2% 86.2%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.53 45.0 3.81e-01 90.9% 92.5%
2eduA01 1.10.150.280 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AF1531-like domain 0.53 27.0 3.34e-01 84.8% 79.0%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 40.0 4.04e-01 82.6% 88.6%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.52 34.0 3.96e-01 94.7% 96.7%
4fz4A00 1.20.140.130 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.52 39.0 3.75e-01 80.3% 90.9%
3k7dA01 1.20.120.1510 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 38.0 4.09e-01 93.2% 91.2%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 37.0 4.06e-01 76.5% 100.0%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 44.0 3.56e-01 97.7% 68.8%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.50 38.0 3.78e-01 78.8% 85.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4028884 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 42.0 4.51e-01 95.5% 77.4%
5001160 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 41.0 4.20e-01 84.1% 73.1%
4210617 101.1.10.13 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.58 45.0 4.39e-01 81.8% 97.2%
4969272 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 40.0 4.15e-01 78.0% 76.7%
3199446 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.57 30.0 3.47e-01 81.1% 67.0%
5009905 1075.5.1.8 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 0.57 42.0 3.46e-01 76.5% 83.5%
5082720 633.6.1.1 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.53 37.0 3.45e-01 70.5% 85.3%
4324738 160.1.1.1 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C 0.52 42.0 3.96e-01 87.9% 86.7%
3639859 5001.1.1.62 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YIF1 0.51 45.0 3.94e-01 96.2% 94.0%
4364808 3608.1.1.1 ↗ alpha bundles › Surface antigen HP0197 N-terminal domain › Surface antigen HP0197 N-terminal domain › Surface antigen HP0197 N-terminal domain › GAGBD 0.51 39.0 3.65e-01 80.3% 88.5%
5079439 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 32.0 3.56e-01 79.5% 80.0%
3998866 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.51 39.0 3.72e-01 82.6% 83.1%