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OQ508956.1__WGH49595.1__X__00075

Bact-Vir

OQ508956.1__WGH49595.1__X__00075

Identity

Accession:
OQ508956 ↗
Kingdom:
phage

Quality

68.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.75 56.0 4.63e-01 98.2% 45.5%
7b7nH01 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.74 62.0 4.79e-01 100.0% 41.7%
2ipiA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.71 58.0 3.86e-01 94.6% 39.9%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.70 55.0 4.10e-01 98.2% 34.0%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 53.0 5.18e-01 92.9% 74.2%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.68 57.0 4.32e-01 98.2% 39.1%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 51.0 4.46e-01 98.2% 52.2%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 53.0 4.47e-01 98.2% 49.5%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.67 52.0 4.97e-01 94.6% 72.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.67 54.0 4.65e-01 92.9% 67.4%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 57.0 4.92e-01 98.2% 69.0%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 46.0 3.52e-01 91.1% 32.3%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.64 56.0 4.31e-01 100.0% 42.4%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 55.0 4.34e-01 98.2% 55.0%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.63 47.0 4.00e-01 96.4% 46.1%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.63 52.0 4.00e-01 100.0% 88.8%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 54.0 4.36e-01 98.2% 59.5%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.63 52.0 4.59e-01 92.9% 91.7%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.62 51.0 4.62e-01 96.4% 79.3%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 54.0 4.47e-01 98.2% 54.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 53.0 3.88e-01 100.0% 50.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 52.0 4.54e-01 98.2% 91.3%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.62 54.0 4.00e-01 98.2% 44.2%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 54.0 4.06e-01 98.2% 65.9%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.19e-01 98.2% 90.4%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.62 53.0 4.43e-01 100.0% 54.5%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 42.0 3.19e-01 71.4% 29.6%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 47.0 4.68e-01 92.9% 80.3%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.62 52.0 3.89e-01 98.2% 47.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 49.0 4.07e-01 94.6% 52.3%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.61 47.0 4.90e-01 91.1% 100.0%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 41.0 3.11e-01 71.4% 74.8%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 48.0 4.22e-01 91.1% 83.1%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 4.27e-01 98.2% 54.9%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 41.0 3.39e-01 71.4% 77.1%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.30e-01 96.4% 56.1%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 40.0 3.21e-01 71.4% 32.8%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 47.0 4.35e-01 91.1% 68.1%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 41.0 3.13e-01 71.4% 29.9%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.59 47.0 4.26e-01 100.0% 96.6%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 39.0 3.18e-01 71.4% 33.3%
3rbgD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.09e-01 98.2% 57.3%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 38.0 3.10e-01 71.4% 32.8%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.58 46.0 4.48e-01 94.6% 87.3%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.58 47.0 3.46e-01 98.2% 78.9%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 49.0 3.32e-01 98.2% 63.7%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.85e-01 92.9% 84.8%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 46.0 3.40e-01 94.6% 42.2%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 47.0 4.25e-01 100.0% 100.0%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 37.0 3.12e-01 73.2% 35.8%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.45e-01 83.9% 86.1%
4wd3A02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.55 43.0 4.02e-01 92.9% 69.3%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.55 42.0 3.37e-01 85.7% 81.2%
6usmB01 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 42.0 3.32e-01 94.6% 83.0%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.85e-01 98.2% 93.5%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.51e-01 100.0% 96.4%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.66e-01 100.0% 78.7%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 40.0 4.00e-01 91.1% 87.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2095502 3145.1.1.1 beta sandwiches › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › C-terminal domain of envelope glycoprotein H › Herpes_glycoH_C 0.73 61.0 4.50e-01 98.2% 35.9%
4025669 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 55.0 4.79e-01 92.9% 100.0%
4170310 821.1.1.9 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.67 55.0 4.70e-01 91.1% 61.1%
5046010 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 43.0 3.61e-01 71.4% 37.0%
4064225 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.66 59.0 4.28e-01 100.0% 61.3%
5020151 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.66 58.0 4.34e-01 98.2% 68.9%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.65 51.0 4.88e-01 91.1% 100.0%
4250283 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.65 54.0 4.53e-01 98.2% 87.6%
4928621 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.64 54.0 4.15e-01 98.2% 40.0%
3588234 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.64 51.0 4.33e-01 98.2% 51.0%
4015747 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.64 54.0 3.52e-01 98.2% 48.0%
5070409 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.64 53.0 4.59e-01 92.9% 64.8%
4105434 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 53.0 3.99e-01 98.2% 60.4%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 47.0 5.08e-01 87.5% 100.0%
4614122 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.64 55.0 3.94e-01 100.0% 55.9%
5065393 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.63 52.0 4.32e-01 94.6% 75.7%
5030770 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 51.0 4.35e-01 92.9% 60.0%
3223489 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.63 43.0 3.32e-01 71.4% 30.8%
4929030 304.5.1.1 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.63 50.0 4.16e-01 94.6% 90.9%
3972361 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.63 50.0 4.43e-01 94.6% 86.7%
4654177 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.62 49.0 3.35e-01 94.6% 22.4%
4979300 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 41.0 3.19e-01 71.4% 29.7%
4937330 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.61 48.0 4.21e-01 94.6% 82.1%
4998687 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 41.0 3.24e-01 71.4% 32.3%
5079496 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 39.0 3.17e-01 71.4% 32.2%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.60 48.0 3.30e-01 94.6% 24.3%
3998576 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 48.0 3.42e-01 96.4% 28.6%
3499188 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.60 45.0 3.81e-01 94.6% 47.0%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 49.0 3.80e-01 100.0% 42.1%
4021858 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 40.0 3.34e-01 71.4% 39.0%
3593295 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.17e-01 73.2% 34.5%
5046979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.20e-01 71.4% 34.5%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 39.0 3.22e-01 71.4% 34.5%
3313678 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.17e-01 75.0% 74.3%
4002901 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.59 39.0 2.96e-01 71.4% 27.1%
3470280 11.1.1.161 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII 0.59 45.0 3.60e-01 96.4% 39.2%
4952123 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 47.0 4.66e-01 98.2% 86.7%
5449 304.121.1.1 a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 0.59 47.0 4.18e-01 100.0% 90.4%
3395675 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.59 41.0 2.99e-01 71.4% 25.8%
4979666 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 39.0 3.08e-01 73.2% 33.0%
3519987 11.1.1.161 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII 0.58 44.0 3.56e-01 100.0% 40.0%
3646599 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.58 41.0 3.15e-01 75.0% 74.3%
4028834 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.58 39.0 3.16e-01 71.4% 33.3%
199962 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.58 46.0 4.48e-01 94.6% 87.3%
5034852 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 3.79e-01 98.2% 53.1%
3924796 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.57 38.0 3.04e-01 71.4% 33.0%
5018703 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.57 46.0 4.09e-01 98.2% 61.1%
4946840 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 37.0 3.04e-01 71.4% 33.9%
3398459 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 45.0 3.86e-01 94.6% 97.0%
5075317 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.56 40.0 3.86e-01 78.6% 90.8%
3593320 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 44.0 3.94e-01 92.9% 91.8%
4680230 223.8.1.0 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.55 38.0 3.20e-01 76.8% 78.3%
3467170 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.55 42.0 4.15e-01 92.9% 85.7%
3948638 223.8.1.4 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.54 40.0 3.08e-01 87.5% 58.1%
3228434 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.53 38.0 2.71e-01 82.1% 54.9%
3282232 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.08e-01 87.5% 88.7%
3501768 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 41.0 3.93e-01 92.9% 80.0%
3215094 382.1.1.20 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF29036 0.51 42.0 3.50e-01 96.4% 65.7%