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OQ508957.1__WGH49722.1__X__00006

Bact-Vir

OQ508957.1__WGH49722.1__X__00006

Identity

Accession:
OQ508957 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alishewanella_phage_vB_AspM_Slickus01

TaxID: 3038239

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-126
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qexA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.78 73.0 5.59e-01 100.0% 93.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.52 23.0 2.75e-01 81.0% 58.4%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 3.23e-01 77.6% 99.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575094 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.75 57.0 6.18e-01 100.0% 92.0%
4946838 2003.1.2.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.58 40.0 3.36e-01 70.7% 78.0%
3720266 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.71e-01 81.9% 56.0%
D2 medium residues 134-174_271-298
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tgoA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.79 62.0 4.60e-01 84.1% 83.8%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.68 45.0 5.03e-01 72.5% 94.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 46.0 4.45e-01 73.9% 75.6%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.65 46.0 3.76e-01 76.8% 56.1%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.64 52.0 4.41e-01 88.4% 57.9%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.58 43.0 4.31e-01 78.3% 77.1%
3rmrA01 1.20.5.2710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 42.0 4.47e-01 76.8% 98.3%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.55 44.0 4.04e-01 89.9% 75.5%
1d2dA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.52 39.0 4.25e-01 82.6% 100.0%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 39.0 3.20e-01 87.0% 66.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994773 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.62 44.0 3.40e-01 75.4% 38.8%
3961415 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.59 43.0 2.87e-01 79.7% 19.3%
1883321 3263.1.1.1 ↗ alpha arrays › ATR1 N-terminal domain › ATR1 N-terminal domain › ATR1 N-terminal domain › ATR1_N 0.58 42.0 4.47e-01 76.8% 98.3%
3701020 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 47.0 4.47e-01 89.9% 97.5%
D3 medium residues 180-262
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qexA06 3.40.1820.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease H-like motif › DnaQ-like 3'-5' exonuclease 0.83 78.0 7.53e-01 100.0% 94.6%
4b08A08 3.40.1820.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease H-like motif › B family DNA polymerase, thumb domain, alpha/beta motif 0.63 49.0 4.99e-01 100.0% 87.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 36.0 3.90e-01 92.8% 67.6%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 35.0 3.94e-01 94.0% 78.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 36.0 4.03e-01 92.8% 83.1%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 37.0 3.86e-01 94.0% 68.4%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 35.0 3.67e-01 94.0% 62.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 35.0 3.93e-01 94.0% 81.7%
2gv9B06 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.58 52.0 3.89e-01 100.0% 42.9%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 31.0 3.97e-01 84.3% 97.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 33.0 3.83e-01 92.8% 83.6%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 36.0 3.60e-01 94.0% 61.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 33.0 3.58e-01 94.0% 68.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 34.0 3.56e-01 92.8% 66.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 3.81e-01 94.0% 79.7%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 3.84e-01 94.0% 82.8%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.55 43.0 4.30e-01 85.5% 82.1%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 35.0 3.65e-01 96.4% 71.6%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 34.0 3.71e-01 94.0% 77.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.62e-01 94.0% 73.3%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 35.0 3.79e-01 92.8% 84.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 32.0 3.46e-01 94.0% 70.0%
3hjgA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.52 37.0 2.87e-01 75.9% 89.6%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 4.01e-01 88.0% 84.8%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.97e-01 95.2% 84.6%
2p5zX04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.51 38.0 4.24e-01 83.1% 100.0%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 4.05e-01 89.2% 94.3%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 4.18e-01 83.1% 100.0%
3k6oA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.50 38.0 4.03e-01 85.5% 94.5%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1256613 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.84 78.0 5.98e-01 100.0% 50.0%
5031487 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.71 51.0 4.07e-01 100.0% 39.0%
4978606 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.64 50.0 4.10e-01 100.0% 45.2%
5069335 4969.1.1.0 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.63 51.0 4.17e-01 100.0% 47.7%
3792756 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 44.0 4.72e-01 84.3% 88.6%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 35.0 4.00e-01 92.8% 80.0%
3828749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 32.0 3.37e-01 94.0% 56.0%
3749194 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 34.0 3.76e-01 92.8% 71.9%
3591824 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 36.0 3.85e-01 94.0% 72.9%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 33.0 3.89e-01 92.8% 83.6%
1386398 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 34.0 3.56e-01 92.8% 62.7%
4013671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 33.0 3.74e-01 92.8% 85.5%
3430247 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.56 45.0 4.15e-01 85.5% 71.2%
3692073 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 33.0 3.53e-01 94.0% 68.6%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 33.0 3.61e-01 92.8% 73.8%
5025210 4969.1.1.1 ↗ alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.55 43.0 3.67e-01 100.0% 48.7%
3864347 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 36.0 3.93e-01 94.0% 84.6%
4020558 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 33.0 3.56e-01 94.0% 73.8%
3763060 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 35.0 3.75e-01 94.0% 78.6%
4654307 2.1.1.73 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.53 39.0 4.24e-01 85.5% 95.7%
3988534 2.1.1.104 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_1st 0.53 41.0 4.30e-01 88.0% 93.3%
4232512 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 41.0 4.17e-01 88.0% 88.0%
3496962 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 4.02e-01 85.5% 84.4%
4140237 2.1.1.88 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 0.51 38.0 3.77e-01 85.5% 74.4%
3690939 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.50 40.0 3.08e-01 91.6% 96.0%
4019523 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.50 40.0 3.05e-01 90.4% 95.6%
4147443 2.1.1.38 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB 0.50 38.0 3.85e-01 84.3% 82.5%