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OQ508957.1__WGH49813.1__X__00097

Bact-Vir

OQ508957.1__WGH49813.1__X__00097

Identity

Accession:
OQ508957 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-45_177-239
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26809.1 best Phage_T4_gp13 31.7 1.70e-07 62.5% 23.5%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.74 51.0 5.20e-01 74.0% 71.8%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.70 40.0 4.41e-01 94.2% 69.4%
2x0cA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.70 54.0 4.46e-01 80.8% 88.2%
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 59.0 4.22e-01 98.1% 55.3%
4jvsA01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 47.0 4.46e-01 74.0% 62.7%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.66 50.0 4.33e-01 81.7% 94.6%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.65 38.0 3.61e-01 76.9% 47.6%
4kc9A02 1.20.120.1750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 49.0 3.85e-01 81.7% 73.8%
2ks9A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 48.0 3.27e-01 79.8% 23.7%
7eu3E01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 44.0 4.73e-01 81.7% 86.2%
2zueA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.63 36.0 3.50e-01 71.2% 49.6%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 42.0 4.92e-01 80.8% 97.3%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 34.0 3.90e-01 87.5% 78.7%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 43.0 4.55e-01 84.6% 88.2%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.57 40.0 4.34e-01 84.6% 88.2%
3nrhA00 1.20.120.1550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Protein of unknown function DUF5063 0.57 44.0 3.92e-01 84.6% 56.3%
3sqnA03 1.10.1790.30 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.57 48.0 4.61e-01 91.3% 96.6%
1m56C02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.56 45.0 3.63e-01 84.6% 49.5%
1bf5A01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.56 50.0 4.19e-01 95.2% 93.5%
1lk3A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 36.0 3.30e-01 95.2% 48.5%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.56 40.0 3.53e-01 76.0% 82.4%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 43.0 4.60e-01 91.3% 94.6%
2yevA03 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.55 45.0 3.75e-01 89.4% 89.1%
2ppqA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.54 48.0 3.82e-01 98.1% 87.9%
5d18A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 43.0 3.47e-01 84.6% 46.0%
4doyA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 46.0 3.84e-01 94.2% 88.0%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 41.0 4.11e-01 81.7% 79.4%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.53 44.0 3.63e-01 90.4% 89.0%
1nigA00 1.20.1200.10 Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like 0.53 46.0 4.10e-01 93.3% 80.8%
2w4sA00 1.10.10.1440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain 0.53 37.0 4.00e-01 83.7% 88.4%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 43.0 4.34e-01 88.5% 87.9%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 44.0 4.23e-01 94.2% 90.0%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.52 41.0 4.01e-01 96.2% 78.9%
1nu7D02 1.20.120.760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2 0.52 40.0 3.76e-01 82.7% 95.3%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 43.0 4.35e-01 99.0% 94.1%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.51 42.0 3.84e-01 92.3% 74.8%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.51 47.0 3.93e-01 100.0% 68.8%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 45.0 4.04e-01 100.0% 68.2%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.50 39.0 3.64e-01 83.7% 88.0%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585138 4275.1.1.9 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › PF26809 0.89 85.0 6.92e-01 100.0% 84.6%
5004297 4275.1.1.0 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.70 62.0 6.28e-01 99.0% 100.0%
3785454 4006.1.1.0 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.70 52.0 5.25e-01 77.9% 94.3%
3996622 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.69 45.0 3.98e-01 76.9% 46.9%
3407072 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 44.0 4.97e-01 92.3% 86.3%
3218595 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.66 51.0 4.05e-01 80.8% 44.6%
4021307 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.65 45.0 3.37e-01 74.0% 29.6%
4945321 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.64 56.0 4.55e-01 95.2% 62.6%
3978522 1014.1.1.1 alpha arrays › AopB › AopB › AopB › SseC 0.61 45.0 3.67e-01 76.9% 42.1%
4189966 174.1.1.64 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF31049 0.61 45.0 3.93e-01 76.9% 53.5%
4998672 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 43.0 4.60e-01 83.7% 83.3%
5045324 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.60 46.0 3.71e-01 81.7% 45.5%
3592552 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.60 49.0 3.95e-01 90.4% 68.6%
4949106 2007.1.3.74 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › MetOD2 0.59 53.0 4.30e-01 100.0% 76.6%
3612510 171.1.1.0 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.59 49.0 3.73e-01 91.3% 66.9%
3829016 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 44.0 4.16e-01 84.6% 64.8%
3287687 633.23.1.7 alpha bundles › Bromodomain-like › Claudin › Claudin › DUF5336 0.59 45.0 4.25e-01 79.8% 68.0%
3754034 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.59 41.0 4.52e-01 92.3% 88.2%
3939799 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.58 50.0 4.56e-01 94.2% 89.3%
3939260 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 46.0 4.72e-01 87.5% 87.0%
3720032 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.57 44.0 4.22e-01 81.7% 77.5%
3617262 604.13.1.1 alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like › USP8_dimer 0.57 40.0 3.71e-01 84.6% 58.5%
3936623 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.57 43.0 4.08e-01 80.8% 69.6%
3211044 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.57 49.0 4.67e-01 93.3% 93.3%
4512488 611.9.1.0 alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.56 45.0 4.20e-01 87.5% 91.1%
3371182 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 41.0 4.13e-01 90.4% 75.2%
3429164 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 43.0 4.51e-01 88.5% 86.3%
3484071 604.13.1.0 alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like 0.55 40.0 3.68e-01 84.6% 59.2%
3934928 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 42.0 4.43e-01 91.3% 90.5%
3581259 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.54 42.0 4.46e-01 91.3% 94.4%
3938297 1188.1.1.1 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.53 41.0 3.10e-01 82.7% 60.7%
3389454 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.53 44.0 4.26e-01 92.3% 89.2%
3228902 174.1.1.13 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 0.53 44.0 4.04e-01 94.2% 84.1%
3655677 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 43.0 3.52e-01 87.5% 70.5%
3884349 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 43.0 4.03e-01 85.6% 73.6%
3520835 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 3.63e-01 94.2% 47.3%
5019864 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.53 47.0 3.78e-01 100.0% 89.0%
3408380 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 41.0 4.24e-01 87.5% 87.0%
3284767 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.52 39.0 3.37e-01 79.8% 78.8%
3204596 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 46.0 3.15e-01 100.0% 69.9%
3368498 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.52 41.0 4.10e-01 92.3% 82.9%
3368220 1075.1.2.12 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70 0.52 41.0 3.01e-01 84.6% 86.3%
4951888 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.52 46.0 3.71e-01 100.0% 89.3%
3973389 109.4.1.1248 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2753 0.52 43.0 4.10e-01 94.2% 76.0%
3936972 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 44.0 4.21e-01 91.3% 81.7%
3993973 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 2.69e-01 94.2% 21.7%
4461864 172.2.1.1 alpha complex topology › Citrate synthase-like › Urease accessory protein ureF › Urease accessory protein ureF › UreF 0.51 38.0 3.01e-01 79.8% 93.9%
3824532 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 3.52e-01 100.0% 44.9%
3735273 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 45.0 4.10e-01 97.1% 80.6%
D2 medium residues 50-173
PDB
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 40.0 3.29e-01 100.0% 36.0%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 4.46e-01 100.0% 79.2%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 30.0 4.10e-01 88.7% 95.2%
3l4yA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 36.0 3.54e-01 97.6% 55.8%
2k2pA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 29.0 3.92e-01 89.5% 93.8%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 34.0 3.42e-01 99.2% 56.9%
5nn3A05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 33.0 3.25e-01 95.2% 53.8%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 48.0 3.70e-01 94.4% 71.3%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.66e-01 100.0% 62.8%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.53 39.0 4.36e-01 99.2% 100.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 26.0 3.03e-01 87.9% 68.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988897 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.73 39.0 3.36e-01 100.0% 33.7%
4163669 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 36.0 3.59e-01 99.2% 52.3%
5037041 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 36.0 4.02e-01 99.2% 83.2%
3605925 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.52 29.0 3.72e-01 91.9% 95.7%
3296862 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.51 29.0 3.58e-01 91.9% 89.3%
4061251 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 29.0 3.43e-01 92.7% 80.0%
3786628 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.51 27.0 3.30e-01 87.9% 80.0%
3553689 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.51 28.0 3.48e-01 89.5% 88.0%
5023371 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 35.0 3.87e-01 97.6% 91.6%
3514901 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.50 28.0 3.51e-01 89.5% 89.3%
3223025 5001.1.1.65 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Serpentine_r_xa 0.50 43.0 3.30e-01 95.2% 69.3%
3936571 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 28.0 3.48e-01 89.5% 89.3%
4002798 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.50 27.0 3.54e-01 88.7% 94.3%