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OQ508957.1__WGH49827.1__X__00111
Bact-VirOQ508957.1__WGH49827.1__X__00111
Identity
- Accession:
- OQ508957 ↗
- Kingdom:
- phage
Quality
87.3
mean pLDDT
Taxonomy
TaxID: 3038239
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-84
Domain cluster:
rep: OR258281.1__WNA16007.1__XaC1_364__00364__D23-61_152-191
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.61 | 53.0 | 4.59e-01 | 100.0% | 96.2% |
| 2fm8C01 | 1.10.4150.10 | Mainly Alpha › Orthogonal Bundle › SipA N-terminal domain-like › SipA N-terminal domain-like | 0.60 | 47.0 | 3.61e-01 | 88.5% | 82.3% |
| 3gwnA00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.60 | 51.0 | 4.58e-01 | 97.4% | 67.3% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.60 | 41.0 | 4.16e-01 | 75.6% | 71.2% |
| 3zssA02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 49.0 | 4.93e-01 | 98.7% | 91.1% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.60 | 48.0 | 4.41e-01 | 96.2% | 66.7% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 52.0 | 4.60e-01 | 100.0% | 96.6% |
| 1h6gA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 49.0 | 4.30e-01 | 96.2% | 96.0% |
| 1f16A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.55 | 42.0 | 3.20e-01 | 83.3% | 38.0% |
| 1q5nA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.54 | 47.0 | 3.36e-01 | 100.0% | 81.9% |
| 2r0rB00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.53 | 42.0 | 4.23e-01 | 93.6% | 87.2% |
| 1f8uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 2.70e-01 | 94.9% | 45.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 38.0 | 3.43e-01 | 79.5% | 88.3% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.51 | 44.0 | 4.18e-01 | 97.4% | 86.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5035779 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 46.0 | 4.04e-01 | 80.8% | 76.7% |
| 4951139 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 49.0 | 4.62e-01 | 98.7% | 76.0% |
| 3615973 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 38.0 | 3.40e-01 | 75.6% | 93.0% |
| 3897959 | 198.1.1.8 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA+SapB_2+SapB_1 | 0.53 | 43.0 | 3.85e-01 | 92.3% | 67.8% |
| 3394585 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.52 | 35.0 | 2.91e-01 | 100.0% | 36.1% |
| 3568853 | 198.1.1.23 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA, SapB_1 | 0.52 | 42.0 | 3.83e-01 | 94.9% | 68.7% |
| 3261605 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.51 | 41.0 | 4.12e-01 | 89.7% | 98.8% |
| 3877309 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.51 | 41.0 | 3.96e-01 | 92.3% | 90.0% |
| 3757706 | 198.1.1.7 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapA | 0.51 | 41.0 | 3.73e-01 | 92.3% | 70.9% |
D2
medium
residues 103-141
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4a2aA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.83 | 66.0 | 5.48e-01 | 87.2% | 95.4% |
| 2ychA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.74 | 58.0 | 4.10e-01 | 92.3% | 28.1% |
| 5zr4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 59.0 | 4.51e-01 | 97.4% | 46.1% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.73 | 58.0 | 3.98e-01 | 87.2% | 28.9% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 50.0 | 4.24e-01 | 74.4% | 45.5% |
| 3h1qA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.71 | 57.0 | 4.13e-01 | 92.3% | 32.2% |
| 1kskA01 | 3.10.290.10 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain | 0.71 | 62.0 | 5.20e-01 | 100.0% | 84.8% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.69 | 55.0 | 5.13e-01 | 97.4% | 98.1% |
| 3zx4A02 | 3.30.980.20 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 | 0.69 | 53.0 | 4.06e-01 | 89.7% | 36.8% |
| 4fjqA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.68 | 49.0 | 2.82e-01 | 76.9% | 18.2% |
| 1qo0D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 4.93e-01 | 84.6% | 87.0% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 51.0 | 4.64e-01 | 84.6% | 72.7% |
| 3qw4B02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 46.0 | 2.98e-01 | 79.5% | 82.8% |
| 4a17O01 | 1.10.1650.10 | Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 › | 0.60 | 46.0 | 4.22e-01 | 92.3% | 61.8% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 43.0 | 2.92e-01 | 89.7% | 68.0% |
| 2rcnA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.59 | 45.0 | 4.00e-01 | 89.7% | 91.9% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 48.0 | 4.17e-01 | 92.3% | 85.0% |
| 5ekdA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.58 | 47.0 | 3.53e-01 | 97.4% | 36.9% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.09e-01 | 87.2% | 85.7% |
| 1furB03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.56 | 43.0 | 4.10e-01 | 94.9% | 100.0% |
| 1huxA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 42.0 | 3.07e-01 | 100.0% | 30.7% |
| 2ga1A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 43.0 | 3.53e-01 | 89.7% | 54.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3435095 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.84 | 74.0 | 7.04e-01 | 100.0% | 84.4% |
| 3769873 | 101.1.11.120 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_ERCC6L2 | 0.78 | 67.0 | 6.49e-01 | 100.0% | 91.1% |
| 3787336 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.77 | 64.0 | 5.84e-01 | 100.0% | 70.9% |
| 3633868 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.77 | 66.0 | 5.53e-01 | 100.0% | 69.6% |
| 3630235 | 109.4.1.1196 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Glyco_hydro_15 | 0.76 | 63.0 | 3.91e-01 | 94.9% | 16.7% |
| 3536537 | 110.1.1.34 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Glyco_hydro_15 | 0.75 | 62.0 | 3.90e-01 | 97.4% | 18.6% |
| 3398979 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.74 | 51.0 | 5.12e-01 | 74.4% | 75.0% |
| 3758407 | 589.1.2.7 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Glyco_hydro_15 | 0.72 | 60.0 | 3.83e-01 | 97.4% | 18.1% |
| 3560411 | 148.1.3.336 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Glyco_hydro_15 | 0.72 | 60.0 | 3.83e-01 | 97.4% | 18.1% |
| 3864511 | 109.2.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 | 0.72 | 60.0 | 3.83e-01 | 97.4% | 18.1% |
| 4934615 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.71 | 58.0 | 3.66e-01 | 94.9% | 22.5% |
| 4591229 | 190.1.1.8 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT | 0.69 | 54.0 | 4.33e-01 | 100.0% | 55.8% |
| 4953552 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.69 | 51.0 | 5.10e-01 | 82.1% | 80.0% |
| None | — | 0.66 | 41.0 | 2.51e-01 | 92.3% | 9.4% | |
| 4661100 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.62 | 52.0 | 4.20e-01 | 100.0% | 61.3% |
| 4089208 | 101.1.1.25 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF433 | 0.60 | 46.0 | 3.89e-01 | 84.6% | 80.0% |
| 3595001 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 43.0 | 4.19e-01 | 82.1% | 71.1% |
| 3702243 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.58 | 46.0 | 4.24e-01 | 94.9% | 70.9% |
| 4079594 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.58 | 49.0 | 4.06e-01 | 100.0% | 65.3% |
| 4292146 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.58 | 49.0 | 4.06e-01 | 100.0% | 65.3% |
| 4501825 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.56 | 45.0 | 3.85e-01 | 100.0% | 65.3% |
| 4949225 | 2484.1.1.94 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C_2 | 0.55 | 42.0 | 2.48e-01 | 100.0% | 43.0% |
| 4438215 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.55 | 47.0 | 3.76e-01 | 100.0% | 62.5% |
| 4146098 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.54 | 45.0 | 3.75e-01 | 100.0% | 65.3% |
| 2771394 | 1112.1.1.0 ↗ | alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain | 0.53 | 42.0 | 3.83e-01 | 97.4% | 95.0% |