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OQ508958.1__WGH49923.1__X__00014

Bact-Vir

OQ508958.1__WGH49923.1__X__00014

Identity

Accession:
OQ508958 ↗
Kingdom:
phage

Quality

45.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudoalteromonas_phage_vB_PtuP_Slicky01

TaxID: 3038240

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 204-286
PDB
D2 medium residues 452-511
PDB
D3 medium residues 614-688
PDB
D4 medium residues 808-863
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.77 51.0 4.61e-01 80.4% 50.0%
3u9rB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.74 54.0 3.46e-01 80.4% 16.7%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.68 51.0 3.55e-01 83.9% 36.2%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 49.0 3.32e-01 82.1% 32.8%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.60 45.0 3.27e-01 80.4% 31.0%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.59 40.0 3.38e-01 71.4% 43.1%
1mk1A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 39.0 2.74e-01 91.1% 20.3%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.58 42.0 3.46e-01 80.4% 41.4%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 44.0 3.82e-01 87.5% 55.3%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 42.0 3.41e-01 82.1% 61.9%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.15e-01 75.0% 37.5%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 45.0 3.57e-01 91.1% 81.5%
2reoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 2.88e-01 87.5% 75.8%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.53 40.0 3.04e-01 89.3% 32.5%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.05e-01 100.0% 66.8%
5dh0A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.52 41.0 3.27e-01 87.5% 100.0%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.69e-01 91.1% 49.8%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 2.76e-01 91.1% 57.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4269306 101.1.1.287 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.80 49.0 5.20e-01 71.4% 70.0%
4976863 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.79 54.0 3.37e-01 80.4% 13.6%
4538427 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.79 58.0 5.53e-01 78.6% 67.7%
3238440 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.77 59.0 5.66e-01 82.1% 76.9%
3932319 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.77 55.0 4.55e-01 75.0% 46.3%
4019548 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.76 57.0 5.19e-01 80.4% 64.0%
3798173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 55.0 5.15e-01 80.4% 77.1%
3922168 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.73 55.0 5.10e-01 80.4% 67.1%
3170562 2484.5.1.5 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › TYA 0.72 58.0 4.98e-01 89.3% 56.7%
3500575 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 52.0 5.08e-01 75.0% 73.3%
3173429 101.1.2.463 ↗ alpha arrays › HTH › HTH › winged helix domain › TYA 0.72 58.0 4.98e-01 89.3% 55.6%
3178473 192.29.1.119 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TYA 0.72 58.0 4.97e-01 89.3% 56.7%
3180777 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 54.0 5.00e-01 80.4% 71.4%
3178411 101.1.1.311 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TYA 0.72 57.0 4.84e-01 89.3% 53.7%
3533067 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.71 53.0 4.97e-01 80.4% 68.6%
4559316 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.71 53.0 4.99e-01 80.4% 67.1%
3873692 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.70 51.0 5.17e-01 76.8% 81.8%
3518933 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.70 52.0 4.99e-01 80.4% 75.4%
3936163 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.69 53.0 5.08e-01 83.9% 76.9%
3781946 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.69 51.0 4.91e-01 80.4% 75.4%
4096162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.68 55.0 4.58e-01 89.3% 57.0%
3250201 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.68 50.0 4.79e-01 80.4% 72.3%
3761824 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.68 50.0 4.68e-01 80.4% 65.7%
4011010 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 4.02e-01 96.4% 46.0%
4944029 601.7.1.16 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_Swt1 0.59 47.0 3.47e-01 92.9% 81.8%
4532257 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.57 43.0 3.01e-01 83.9% 42.0%
54463 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.56 45.0 3.57e-01 91.1% 81.5%
4665163 160.1.1.1 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C 0.52 42.0 3.22e-01 94.6% 62.9%
D5 medium residues 900-1054
PDB