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OQ508958.1__WGH49961.1__X__00052

Bact-Vir

OQ508958.1__WGH49961.1__X__00052

Identity

Accession:
OQ508958 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-149_189-237
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12224.14 best Amidoligase_2 27.2 4.80e-06 59.6% 28.2%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d3aA02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.80 70.0 6.39e-01 91.9% 97.6%
3ng0A02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.79 69.0 5.63e-01 92.4% 79.9%
4hppA02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.78 69.0 5.77e-01 92.4% 77.5%
1r8gA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.75 70.0 5.67e-01 99.0% 70.5%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.70 40.0 4.79e-01 94.4% 82.6%
3ig5A02 3.30.590.50 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.67 63.0 5.10e-01 99.5% 94.1%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 26.0 4.16e-01 80.3% 100.0%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.63 35.0 4.26e-01 89.9% 82.5%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 30.0 4.14e-01 77.3% 93.7%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.61 27.0 4.05e-01 88.9% 100.0%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 26.0 3.92e-01 88.9% 100.0%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 31.0 4.12e-01 79.3% 97.1%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 28.0 3.97e-01 90.4% 100.0%
1r6vA02 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.58 24.0 3.53e-01 76.3% 91.0%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 30.0 3.97e-01 78.8% 95.1%
1tvdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 30.0 3.82e-01 94.9% 85.3%
1x4dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 27.0 3.50e-01 96.0% 80.4%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 27.0 3.77e-01 73.7% 96.8%
1fnoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 28.0 3.64e-01 85.9% 86.4%
2ednA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.56e-01 95.5% 80.5%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 36.0 4.07e-01 90.9% 91.7%
4lc3A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 32.0 3.79e-01 93.4% 86.6%
6d9mA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 37.0 4.18e-01 91.4% 92.7%
1ap8A00 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.53 33.0 3.29e-01 93.4% 56.3%
3u02A01 3.30.70.2200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.88e-01 76.8% 87.5%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.52 23.0 3.10e-01 76.3% 78.9%
4tshB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.69e-01 93.9% 76.9%
1pvtA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 44.0 4.17e-01 92.9% 91.4%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 24.0 3.25e-01 83.8% 87.1%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014247 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.85 74.0 5.84e-01 90.4% 83.5%
3723519 321.1.1.10 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.83 76.0 5.96e-01 94.4% 85.4%
3735130 321.1.1.10 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.83 76.0 5.63e-01 94.9% 85.3%
5023855 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.82 71.0 5.51e-01 89.9% 72.8%
5044400 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.81 72.0 5.37e-01 92.9% 67.3%
4971846 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.80 72.0 5.69e-01 92.9% 77.5%
5000177 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.80 71.0 5.73e-01 92.9% 72.7%
4086700 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.75 70.0 5.55e-01 98.5% 71.4%
4528253 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.74 68.0 5.40e-01 96.0% 70.8%
4441942 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.74 69.0 5.46e-01 98.5% 72.4%
4090827 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.73 68.0 5.43e-01 98.0% 70.3%
4616960 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.73 66.0 5.27e-01 94.9% 70.1%
5037704 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 30.0 4.67e-01 78.3% 100.0%
4984075 304.5.1.30 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › AsnC_trans_reg 0.71 29.0 4.57e-01 78.3% 100.0%
4945047 304.159.1.0 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB 0.69 34.0 4.87e-01 78.3% 100.0%
4988131 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.69 29.0 4.29e-01 71.2% 92.5%
5075371 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.68 30.0 4.31e-01 77.8% 88.9%
5066425 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.68 29.0 4.43e-01 73.2% 97.5%
4931923 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.67 27.0 4.21e-01 71.2% 92.5%
4630470 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.67 26.0 4.25e-01 78.3% 100.0%
4227831 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.67 26.0 4.24e-01 78.3% 100.0%
4012870 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.66 26.0 4.23e-01 82.3% 100.0%
1833373 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.66 25.0 4.18e-01 72.2% 100.0%
4646775 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.65 27.0 4.21e-01 78.3% 98.7%
3723388 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.65 26.0 4.17e-01 71.2% 100.0%
3954472 304.11.1.1 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 0.65 26.0 4.14e-01 71.2% 100.0%
5044202 304.164.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein NegoA.19184.a C-terminal domain › Hypothetical protein NegoA.19184.a C-terminal domain 0.65 25.0 4.16e-01 71.7% 100.0%
4373580 304.5.1.5 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C 0.65 27.0 4.20e-01 78.8% 98.7%
3721749 304.5.1.5 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C 0.65 27.0 4.25e-01 78.8% 100.0%
4931287 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 24.0 3.99e-01 77.3% 100.0%
4475558 304.5.1.5 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C 0.65 26.0 4.16e-01 77.8% 98.6%
4964995 304.24.1.6 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.64 28.0 4.26e-01 78.8% 100.0%
5036839 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 25.0 4.03e-01 73.2% 100.0%
4954778 304.8.1.4 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C 0.63 28.0 4.14e-01 89.9% 100.0%
3740911 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.62 35.0 4.47e-01 79.3% 94.8%
3959820 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.61 27.0 3.83e-01 82.8% 87.8%
5023213 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 24.0 3.86e-01 73.2% 100.0%
3482424 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 25.0 3.73e-01 88.9% 93.3%
4939259 304.5.1.5 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › HisG_C 0.59 28.0 4.04e-01 78.8% 100.0%
3324732 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 21.0 3.08e-01 98.0% 67.4%
3257902 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.58 28.0 4.00e-01 79.3% 100.0%
5052042 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 25.0 3.57e-01 78.8% 86.7%
3719254 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.55 26.0 2.86e-01 84.3% 50.0%
3599893 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 39.0 3.11e-01 75.8% 69.8%
4943776 321.1.1.4 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N 0.52 46.0 3.81e-01 92.9% 82.4%
3961146 304.11.1.1 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 0.52 26.0 3.18e-01 82.3% 71.3%
3701157 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.50 36.0 3.03e-01 73.7% 63.4%
D2 medium residues 150-188_238-298
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k7xA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 51.0 3.50e-01 100.0% 85.3%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.57 31.0 3.38e-01 92.0% 62.4%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.55 46.0 3.79e-01 97.0% 90.5%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.53 38.0 3.02e-01 95.0% 34.9%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.52 45.0 4.17e-01 94.0% 100.0%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 47.0 4.35e-01 100.0% 83.5%
1zylA03 1.20.1270.170 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 33.0 3.34e-01 92.0% 62.1%
3wiwA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.52 47.0 3.17e-01 100.0% 89.2%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 3.47e-01 96.0% 63.7%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 34.0 2.94e-01 81.0% 41.3%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.51 27.0 3.03e-01 89.0% 64.6%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 32.0 3.19e-01 99.0% 59.3%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009863 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.72 45.0 4.39e-01 100.0% 58.3%
3505848 2498.1.1.3 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M2 0.71 49.0 2.96e-01 70.0% 90.3%
5027495 192.12.1.0 alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM 0.58 41.0 4.35e-01 100.0% 85.9%
4947476 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 37.0 3.07e-01 100.0% 35.8%
3280041 150.1.2.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase 0.55 41.0 3.13e-01 80.0% 98.3%
4965795 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.54 47.0 3.66e-01 100.0% 95.7%
1759309 601.13.1.1 alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › Flagellin_C,FliS 0.53 46.0 3.97e-01 99.0% 93.3%
4993995 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.52 33.0 2.96e-01 84.0% 45.0%
4091685 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.52 38.0 3.76e-01 97.0% 71.6%
3494796 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.51 34.0 2.53e-01 86.0% 25.9%
3968913 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.50 40.0 3.16e-01 86.0% 94.3%