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OQ547903.1__WFD61226.1__X__00019

Bact-Vir

OQ547903.1__WFD61226.1__X__00019

Identity

Accession:
OQ547903 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-18_102-152
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nz8A00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.59 51.0 4.31e-01 100.0% 89.1%
2ja9A02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 46.0 4.31e-01 86.8% 72.6%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 4.31e-01 94.1% 92.1%
2gmlA02 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.58 48.0 4.71e-01 94.1% 97.3%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.61e-01 94.1% 88.0%
1wkiA01 3.90.1170.10 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 0.57 46.0 4.03e-01 92.6% 96.3%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.56 38.0 3.48e-01 70.6% 70.3%
4c8yA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 3.93e-01 94.1% 98.1%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.41e-01 92.6% 85.1%
1el6A03 3.90.1160.10 Alpha Beta › Alpha-Beta Complex › Baseplate Structural Protein Gp11; Chain: A, domain 3 › Baseplate structural protein gp11, finger domain 0.54 45.0 3.89e-01 94.1% 92.7%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.61e-01 86.8% 68.2%
2fiuA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.95e-01 95.6% 95.8%
4uw2B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 43.0 3.53e-01 98.5% 68.6%
4kc3B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.70e-01 89.7% 80.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3709350 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.59 50.0 3.82e-01 100.0% 90.0%
4969027 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 47.0 4.18e-01 94.1% 86.0%
4976198 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.57 38.0 3.61e-01 70.6% 75.3%
3269973 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.56 46.0 4.20e-01 94.1% 95.8%
4139990 304.11.1.2 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.55 48.0 4.48e-01 100.0% 94.1%
3305599 304.55.1.20 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P 0.55 42.0 3.91e-01 85.3% 91.1%
3679021 304.8.1.23 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.55 41.0 3.18e-01 85.3% 88.0%
4068568 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.54 38.0 2.64e-01 75.0% 48.6%
4401572 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 38.0 3.59e-01 76.5% 95.3%
5081809 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 36.0 3.72e-01 86.8% 80.0%
3801994 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.51 36.0 3.82e-01 76.5% 98.2%
D2 high residues 34-96
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b30A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.64 48.0 4.01e-01 81.0% 93.6%
4tzmB00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.61 48.0 3.34e-01 88.9% 29.5%
2o8bA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.60 43.0 3.96e-01 77.8% 67.5%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 46.0 3.89e-01 88.9% 72.2%
5jldA01 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.57 46.0 3.91e-01 93.7% 84.2%
3gdzB00 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.57 48.0 4.13e-01 98.4% 91.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.55 38.0 3.55e-01 71.4% 92.2%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 3.59e-01 93.7% 48.9%
3ou2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 41.0 2.94e-01 82.5% 75.0%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.55 41.0 2.98e-01 84.1% 30.1%
1bdsA00 2.20.20.10 Mainly Beta › Single Sheet › Anthopleurin-A › Anthopleurin-A 0.53 35.0 3.92e-01 87.3% 100.0%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.53 41.0 3.10e-01 88.9% 78.5%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.44e-01 93.7% 49.6%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.35e-01 93.7% 48.0%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.50e-01 93.7% 53.2%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.37e-01 93.7% 47.2%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.38e-01 93.7% 48.9%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.58e-01 93.7% 58.9%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 3.28e-01 100.0% 64.4%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.25e-01 93.7% 45.9%
2b0uD02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 37.0 3.62e-01 81.0% 91.7%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.86e-01 100.0% 71.3%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.88e-01 93.7% 82.7%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.51 39.0 3.68e-01 84.1% 85.9%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.84e-01 98.4% 80.2%
3oxnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 40.0 3.38e-01 92.1% 73.9%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 41.0 3.61e-01 93.7% 69.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501383 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.61 50.0 3.20e-01 100.0% 17.8%
4282238 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 2.77e-01 100.0% 7.5%
3551485 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.59 49.0 3.12e-01 100.0% 17.9%
3517776 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.58 49.0 3.85e-01 95.2% 85.2%
4553926 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.57 49.0 4.16e-01 98.4% 84.5%
4122746 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.57 44.0 3.50e-01 82.5% 84.0%
4490931 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.57 49.0 4.15e-01 100.0% 96.4%
4039605 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.57 48.0 3.98e-01 95.2% 87.8%
4190900 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.57 49.0 4.02e-01 100.0% 95.8%
4094669 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.57 43.0 3.39e-01 82.5% 77.0%
4411604 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.56 47.0 4.01e-01 98.4% 94.5%
4154338 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.56 48.0 4.05e-01 100.0% 94.5%
4058788 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.55 43.0 3.95e-01 87.3% 90.6%
3742793 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.55 47.0 3.09e-01 100.0% 20.7%
4039359 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.55 46.0 3.85e-01 100.0% 90.8%
3216948 387.1.7.0 few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold 0.55 34.0 3.74e-01 71.4% 80.0%
3933676 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.54 27.0 2.83e-01 74.6% 48.3%
4043692 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.54 47.0 3.86e-01 100.0% 84.2%
4275014 310.1.1.2 a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.54 46.0 3.87e-01 100.0% 86.1%
3993195 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.54 40.0 3.27e-01 82.5% 44.6%
4413066 383.1.1.5 few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_4 0.54 37.0 4.12e-01 87.3% 100.0%
3395492 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.53 38.0 2.96e-01 77.8% 68.0%
3907975 377.1.1.50 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.53 28.0 3.20e-01 81.0% 71.1%
3445779 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.53 43.0 3.52e-01 93.7% 56.0%
3979431 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 44.0 3.32e-01 93.7% 49.3%
4942265 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 4.14e-01 100.0% 91.8%
3248289 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.90e-01 95.2% 96.5%
4961047 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.52 45.0 4.13e-01 98.4% 80.0%
4962040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.34e-01 93.7% 54.3%
3451427 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 35.0 3.36e-01 73.0% 82.5%
3831895 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.52 44.0 2.95e-01 100.0% 31.3%
3942501 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.99e-01 98.4% 88.9%
5047052 101.1.2.673 alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.51 44.0 3.28e-01 98.4% 41.7%
4025070 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.51 45.0 3.67e-01 100.0% 63.3%
4928989 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.79e-01 93.7% 78.5%
167429 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 42.0 3.25e-01 93.7% 45.9%
3305572 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.51 44.0 2.80e-01 100.0% 33.7%
3824278 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.51 42.0 3.88e-01 93.7% 75.3%
4935614 3457.1.1.1 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.50 40.0 2.93e-01 92.1% 29.5%
3774427 304.8.1.54 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.50 36.0 3.19e-01 98.4% 51.6%