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OQ578995.1__WGL32365.1__X__00037

Bact-Vir

OQ578995.1__WGL32365.1__X__00037

Identity

Accession:
OQ578995 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Staphylococcus_phage_phiST9-C

TaxID: 3038984

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-35_51-135
PDB
Domain cluster: rep: MZ417522.1__QXN67731.1__X__00014__D5-37_64-148
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 40.0 5.08e-01 84.3% 79.2%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 42.0 5.71e-01 88.7% 98.4%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 44.0 5.71e-01 82.6% 96.9%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 44.0 4.66e-01 97.4% 61.9%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 42.0 4.61e-01 96.5% 69.1%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 37.0 4.93e-01 87.0% 95.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 5.18e-01 84.3% 97.5%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.64 47.0 4.23e-01 75.7% 96.7%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 33.0 3.64e-01 91.3% 65.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 31.0 3.72e-01 73.9% 77.0%
7eptR01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 41.0 3.22e-01 93.9% 32.3%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.57 32.0 3.77e-01 73.0% 80.5%
4ecgA00 1.20.1420.20 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif 0.55 45.0 3.23e-01 89.6% 82.3%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 41.0 3.95e-01 94.8% 68.9%
3qweA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.54 47.0 3.70e-01 100.0% 80.0%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.54 37.0 3.44e-01 82.6% 55.8%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.53 49.0 4.59e-01 100.0% 97.2%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 32.0 3.58e-01 87.8% 74.5%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 45.0 3.60e-01 93.9% 71.1%
6o7uc01 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 40.0 3.48e-01 93.0% 50.5%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 46.0 3.55e-01 100.0% 64.7%
8a1gC01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 45.0 3.99e-01 100.0% 81.2%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 32.0 3.66e-01 75.7% 86.4%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.77e-01 74.8% 80.6%
4wjg400 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.51 43.0 3.38e-01 94.8% 72.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033888 101.1.1.489 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF722 0.80 74.0 7.10e-01 97.4% 100.0%
4034281 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 65.0 6.63e-01 100.0% 89.1%
4511316 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.77 45.0 4.17e-01 89.6% 48.2%
4258677 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.76 45.0 3.49e-01 88.7% 29.8%
None — 0.76 44.0 3.46e-01 93.0% 30.0%
4524644 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 46.0 3.76e-01 84.3% 34.6%
4165729 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.73 48.0 4.20e-01 80.0% 46.1%
4148139 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.73 44.0 3.96e-01 87.0% 45.2%
4084282 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.72 44.0 5.04e-01 87.0% 82.4%
3297365 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.72 43.0 3.78e-01 87.0% 41.4%
3974118 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.89e-01 100.0% 98.9%
4060124 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.71 44.0 3.94e-01 86.1% 45.8%
3946805 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.71 43.0 5.24e-01 86.1% 93.3%
3978620 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.71 43.0 3.80e-01 86.1% 42.4%
4518447 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.71 43.0 4.44e-01 86.1% 63.6%
1111579 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.70 44.0 4.58e-01 86.1% 67.9%
1945689 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 44.0 4.46e-01 87.0% 63.7%
3980765 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 44.0 3.82e-01 86.1% 43.6%
4253265 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 43.0 3.82e-01 86.1% 43.6%
3347305 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 44.0 3.82e-01 87.0% 43.6%
3826046 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.70 43.0 3.81e-01 87.0% 43.6%
3644937 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.69 42.0 3.77e-01 87.8% 44.4%
3303765 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.69 43.0 3.83e-01 87.0% 45.0%
4056602 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.68 43.0 3.68e-01 87.0% 41.1%
3339569 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.67 42.0 4.71e-01 87.0% 80.9%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.67 42.0 3.72e-01 87.0% 45.0%
3027028 101.1.1.31 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.62 44.0 4.52e-01 88.7% 76.1%
3498152 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 50.0 4.27e-01 94.8% 56.8%
5076373 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.59 37.0 3.87e-01 93.0% 68.6%
2967092 192.29.1.298 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF30778 0.58 38.0 3.76e-01 94.8% 60.6%
3242888 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 37.0 3.55e-01 93.9% 56.3%
5065387 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.56 34.0 3.51e-01 93.9% 62.3%
4340199 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 50.0 4.67e-01 100.0% 82.8%
3261777 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.55 48.0 3.85e-01 94.8% 71.6%
3491731 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.54 40.0 3.80e-01 97.4% 64.4%
3390728 601.19.1.47 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF4745 0.54 42.0 4.14e-01 93.0% 76.8%
4235067 5086.1.1.142 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Clusterin 0.54 38.0 3.30e-01 73.9% 78.9%
3918849 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.53 40.0 3.60e-01 93.9% 56.9%
3735143 3755.4.1.3 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N 0.53 38.0 3.58e-01 97.4% 61.4%
3828510 3291.1.1.3 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Ist1 0.53 43.0 3.73e-01 90.4% 73.5%
3970616 601.4.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.52 38.0 3.53e-01 96.5% 60.0%
4286404 3755.1.1.14 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › T3SSipB 0.52 33.0 2.93e-01 77.4% 41.1%
3390014 174.1.1.1 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.52 36.0 3.34e-01 93.9% 55.3%
3991480 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 43.0 4.02e-01 95.7% 73.1%
3966368 603.5.1.0 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like 0.51 36.0 3.67e-01 73.9% 74.8%
4410511 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.51 39.0 3.46e-01 97.4% 53.3%
3947717 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.51 36.0 3.29e-01 73.0% 56.1%
3996264 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.51 41.0 3.55e-01 84.3% 87.1%