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OQ587939.1__WGL30507.1__SCRES1_gp80__00079

Bact-Vir

OQ587939.1__WGL30507.1__SCRES1_gp80__00079

Identity

Accession:
OQ587939 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-CRES1

TaxID: 3038220

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 222-249_294-488
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.72 31.0 3.88e-01 83.9% 64.0%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.66 44.0 3.96e-01 99.6% 48.5%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.66 28.0 3.95e-01 80.3% 78.9%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.65 49.0 3.92e-01 100.0% 39.7%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.64 29.0 4.40e-01 71.3% 99.0%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 44.0 3.81e-01 100.0% 46.2%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.62 52.0 3.77e-01 100.0% 31.2%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.58 49.0 3.55e-01 100.0% 31.6%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 24.0 3.44e-01 76.7% 81.1%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.57 44.0 3.76e-01 100.0% 50.4%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.52 49.0 3.66e-01 100.0% 43.6%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.52 35.0 3.50e-01 100.0% 63.6%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.51 40.0 3.81e-01 99.1% 68.0%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.51 46.0 3.70e-01 98.7% 51.3%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.50 46.0 3.72e-01 100.0% 51.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3824851 5084.5.1.43 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF30985 0.59 30.0 3.54e-01 96.9% 66.7%
3616128 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.59 41.0 3.80e-01 86.1% 56.2%
4219107 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.54 46.0 3.43e-01 99.1% 36.2%
4291640 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.52 45.0 3.73e-01 99.1% 50.7%
4886289 5084.10.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.52 46.0 3.39e-01 98.7% 37.2%
D2 medium residues 1-174
PDB
Domain cluster: rep: MZ503613.1__QYC52382.1__X__00037__D1-189
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.71 36.0 4.44e-01 86.8% 75.7%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 36.0 4.32e-01 86.2% 74.4%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 35.0 4.49e-01 88.5% 90.1%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 38.0 4.69e-01 87.9% 97.1%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 29.0 3.93e-01 79.9% 84.4%
1v4pC01 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.61 35.0 4.38e-01 87.9% 89.8%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 41.0 4.63e-01 86.8% 94.9%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 25.0 3.33e-01 79.3% 74.0%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 31.0 3.82e-01 89.1% 85.8%
4pbdA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 29.0 3.70e-01 78.7% 83.3%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 33.0 3.85e-01 83.3% 84.8%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 30.0 3.95e-01 84.5% 100.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 29.0 3.63e-01 88.5% 86.8%
4bzyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 28.0 3.33e-01 89.7% 74.3%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 30.0 3.61e-01 87.9% 84.7%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.51 26.0 2.84e-01 90.8% 56.2%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 4.02e-01 93.7% 83.5%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 4.08e-01 94.3% 83.1%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.50 23.0 2.88e-01 75.9% 68.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943172 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 45.0 5.89e-01 75.3% 100.0%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 34.0 4.25e-01 86.8% 78.0%
3299946 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.67 36.0 4.34e-01 83.3% 78.3%
160389 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.64 37.0 4.32e-01 90.2% 79.7%
4960006 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 37.0 4.53e-01 87.4% 94.5%
4527829 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 29.0 3.83e-01 80.5% 81.1%
2642579 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.60 43.0 4.95e-01 89.7% 98.5%
4888732 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.57 41.0 4.38e-01 86.2% 83.3%
1444177 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 41.0 4.58e-01 85.6% 94.1%
4957560 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.57 41.0 4.71e-01 88.5% 99.2%
3617004 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 24.0 2.95e-01 85.1% 59.1%
4033579 1.1.13.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.55 38.0 4.48e-01 81.6% 100.0%
3826545 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.53 25.0 3.07e-01 86.8% 67.6%
169881 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.51 40.0 3.86e-01 94.3% 72.2%
3928764 11.1.1.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.50 30.0 3.86e-01 88.5% 100.0%
D3 medium residues 175-187_588-645_659-694
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.68 51.0 4.83e-01 78.5% 91.2%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 45.0 4.63e-01 77.6% 100.0%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 28.0 3.59e-01 81.3% 81.0%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.57 43.0 4.33e-01 80.4% 100.0%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.56 40.0 3.75e-01 74.8% 98.6%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 33.0 3.81e-01 79.4% 84.2%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.54 39.0 3.33e-01 79.4% 48.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.53 42.0 4.47e-01 83.2% 100.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4444321 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.64 52.0 4.10e-01 86.0% 68.8%
1320672 1.1.9.5 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.62 52.0 3.92e-01 90.7% 50.6%
3926950 4.1.1.214 ↗ beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.60 35.0 3.36e-01 77.6% 50.8%
5052888 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 41.0 3.94e-01 78.5% 78.4%
3945543 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 42.0 4.72e-01 80.4% 100.0%
4033714 1.1.13.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tail 0.55 40.0 4.28e-01 76.6% 98.9%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.80e-01 79.4% 75.7%
3973341 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 39.0 4.31e-01 80.4% 100.0%
3981654 1.1.13.40 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.51 37.0 3.74e-01 76.6% 100.0%
3495713 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 2.91e-01 72.9% 77.0%
D4 medium residues 188-217_505-587
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nwhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 38.0 2.79e-01 77.9% 55.0%
1ciiA02 3.30.305.10 Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 0.51 37.0 3.95e-01 76.1% 100.0%
7sxqA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 36.0 2.85e-01 75.2% 64.1%
1ghhA00 3.30.910.10 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like 0.50 29.0 3.39e-01 74.3% 80.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4891081 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.62 30.0 2.66e-01 80.5% 33.3%
3699537 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 27.0 2.68e-01 77.9% 37.5%
4923851 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.57 29.0 2.61e-01 80.5% 34.6%
5053046 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.54 32.0 2.75e-01 70.8% 34.6%
3739811 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 33.0 3.75e-01 76.1% 81.8%
4964336 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.52 38.0 2.86e-01 76.1% 49.6%
4936098 212.1.1.60 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N 0.52 38.0 2.96e-01 76.1% 47.2%
3576081 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.52 39.0 2.46e-01 79.6% 24.6%
3921418 233.1.1.0 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.51 32.0 3.67e-01 77.0% 83.5%
None — 0.51 35.0 3.03e-01 70.8% 86.5%
3995183 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.51 32.0 2.54e-01 81.4% 30.6%
162835 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 38.0 2.79e-01 77.9% 55.0%
4966387 212.1.1.60 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N 0.51 37.0 3.04e-01 76.1% 54.4%