←Back to structures

OQ587940.1__WGL30546.1__SCRES2_gp7__00007

Bact-Vir

OQ587940.1__WGL30546.1__SCRES2_gp7__00007

Identity

Accession:
OQ587940 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-CRES2

TaxID: 3038221

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-128
PDB
Domain cluster: rep: NC_020847.1__YP_007674052.1__CPAG_00016__00016__D12-127
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.65 49.0 3.61e-01 94.2% 29.4%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.65 58.0 4.40e-01 100.0% 60.6%
3r9pB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 43.0 3.44e-01 93.0% 33.3%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 32.0 3.51e-01 82.6% 64.6%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 46.0 4.40e-01 91.9% 72.5%
4k00A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 38.0 3.30e-01 72.1% 42.3%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 50.0 4.47e-01 100.0% 99.2%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 48.0 4.17e-01 94.2% 90.3%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.56 39.0 3.55e-01 90.7% 51.6%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 31.0 3.50e-01 82.6% 69.8%
1k25B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 45.0 3.10e-01 93.0% 25.2%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.56 45.0 2.98e-01 89.5% 25.8%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 44.0 3.69e-01 94.2% 50.3%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 3.41e-01 97.7% 43.5%
2ra1A05 2.60.40.2120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 4.11e-01 94.2% 81.4%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 42.0 2.89e-01 83.7% 27.4%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 40.0 3.58e-01 90.7% 56.1%
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.53 41.0 3.69e-01 94.2% 57.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.25e-01 79.1% 66.7%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.56e-01 83.7% 56.8%
5hx0A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 40.0 2.72e-01 84.9% 31.5%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.80e-01 88.4% 29.6%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 42.0 3.95e-01 90.7% 92.6%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 32.0 2.79e-01 94.2% 39.0%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.89e-01 98.8% 45.2%
5jpmH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.55e-01 89.5% 85.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 31.0 3.23e-01 81.4% 68.0%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.50 39.0 3.30e-01 82.6% 88.7%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049605 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.81 49.0 5.90e-01 91.9% 94.5%
4064568 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.73 51.0 4.21e-01 97.7% 41.3%
5008405 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.70 44.0 4.37e-01 93.0% 60.0%
1905698 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.70 50.0 4.47e-01 94.2% 52.4%
4114495 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.70 50.0 3.75e-01 87.2% 31.0%
4305567 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.69 48.0 4.19e-01 97.7% 46.7%
4987631 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.67 49.0 3.71e-01 91.9% 32.4%
3366268 2484.1.1.279 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH_2 0.67 48.0 5.05e-01 94.2% 86.7%
3931383 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.66 47.0 4.12e-01 94.2% 50.0%
4444614 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 44.0 4.53e-01 93.0% 75.0%
4779411 243.3.1.6 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Monellin 0.64 33.0 4.17e-01 70.9% 93.2%
4003669 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.62 48.0 2.96e-01 82.6% 35.2%
4985149 222.1.1.8 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.59 39.0 3.40e-01 72.1% 43.0%
5039143 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.58 42.0 3.74e-01 81.4% 54.2%
3958443 2484.1.1.108 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_assoc 0.57 48.0 3.65e-01 94.2% 40.0%
3957639 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.56 49.0 3.36e-01 95.3% 28.6%
None — 0.56 49.0 3.25e-01 97.7% 24.5%
3539169 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 45.0 3.63e-01 90.7% 73.0%
1283692 2.1.1.102 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCEL_GT_OB 0.56 47.0 4.10e-01 94.2% 87.3%
3266842 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 4.18e-01 95.3% 80.8%
None — 0.56 47.0 3.38e-01 94.2% 33.2%
3957539 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 4.04e-01 94.2% 62.4%
3843423 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.55 48.0 4.21e-01 97.7% 76.9%
3958652 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 47.0 3.67e-01 94.2% 44.3%
5081178 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 37.0 3.19e-01 77.9% 43.2%
4929084 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.90e-01 89.5% 24.8%
3958247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 47.0 3.44e-01 95.3% 35.5%
5042696 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 45.0 4.19e-01 91.9% 74.5%
5075835 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.54 38.0 3.37e-01 90.7% 49.2%
3561019 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.54 47.0 4.12e-01 97.7% 76.9%
3232146 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 38.0 2.59e-01 98.8% 20.0%
3439915 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 43.0 2.98e-01 88.4% 27.1%
3838341 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.53 44.0 2.97e-01 93.0% 27.9%
3340120 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.53 42.0 3.54e-01 97.7% 50.7%
4613401 5.1.4.51 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BNR_4 0.52 45.0 2.86e-01 100.0% 23.9%
3942396 4.1.1.412 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1062 0.52 41.0 4.10e-01 93.0% 86.7%
5040708 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.51 44.0 3.55e-01 94.2% 50.9%
3978190 375.1.1.311 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1062 0.51 40.0 3.95e-01 89.5% 82.2%
3438132 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 43.0 4.11e-01 100.0% 86.7%
1140882 5.1.3.24 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › End_beta_propel 0.51 37.0 3.47e-01 79.1% 76.8%
3778866 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.51 38.0 2.59e-01 89.5% 21.2%
139153 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.51 43.0 2.89e-01 98.8% 45.1%
3904009 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 41.0 2.79e-01 91.9% 25.9%
4934684 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 44.0 3.93e-01 95.3% 70.0%
4062195 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.50 43.0 3.24e-01 98.8% 37.4%