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OQ587940.1__WGL30622.1__SCRES2_gp83__00083

Bact-Vir

OQ587940.1__WGL30622.1__SCRES2_gp83__00083

Identity

Accession:
OQ587940 ↗
Kingdom:
phage

Quality

51.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-CRES2

TaxID: 3038221

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 299-358
PDB
D2 medium residues 412-600
PDB
Domain cluster: rep: ON529866.1__UTC30100.1__MAINES_00610__00061__D285-468
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20155.5 best TMP_3 67.6 1.80e-18 98.9% 82.8%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.77 28.0 4.42e-01 77.8% 81.5%
2dlcX02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 34.0 4.10e-01 88.4% 93.7%
2g5cB02 1.10.3660.10 Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain 0.53 27.0 3.41e-01 85.7% 80.9%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 37.0 3.74e-01 75.1% 91.9%
3c18A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.50 31.0 3.75e-01 76.2% 96.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164789 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.84 65.0 6.96e-01 96.3% 90.3%
3963765 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.81 65.0 6.57e-01 100.0% 83.2%
3981280 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.66 43.0 4.94e-01 98.9% 86.9%
3723402 3352.1.1.4 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Alg6_Alg8 0.60 48.0 3.42e-01 83.6% 77.3%
3277203 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 41.0 4.49e-01 79.9% 98.7%
3788932 192.29.1.165 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF29336 0.53 30.0 3.05e-01 88.4% 54.6%
4950734 3755.3.1.637 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 0.51 26.0 2.69e-01 80.4% 48.4%
3944917 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 25.0 2.38e-01 79.9% 36.4%
D3 medium residues 616-640_699-843
PDB
D4 medium residues 891-1026
PDB
D5 medium residues 1067-1133
PDB
D6 medium residues 1185-1241
PDB
Domain cluster: rep: NC_015463.1__YP_004421475.1__S-CBS2_gp021__00021__D826-887
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.20e-01 70.2% 84.8%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 43.0 3.69e-01 71.9% 65.6%
2dl9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 42.0 3.70e-01 70.2% 66.3%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.62e-01 73.7% 62.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.62 43.0 4.15e-01 77.2% 63.6%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 43.0 4.02e-01 75.4% 87.5%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.61 42.0 4.16e-01 77.2% 68.9%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 40.0 3.17e-01 70.2% 64.1%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 41.0 3.88e-01 73.7% 87.5%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.61e-01 87.7% 76.4%
4l1dC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.28e-01 70.2% 76.1%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 42.0 3.28e-01 77.2% 53.1%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 45.0 3.61e-01 86.0% 89.0%
3wo4B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.40e-01 70.2% 69.1%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 39.0 3.06e-01 70.2% 83.0%
2orzA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 40.0 2.98e-01 73.7% 44.7%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 41.0 4.08e-01 77.2% 96.8%
4ofyD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 39.0 3.35e-01 71.9% 71.8%
3h8hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 39.0 3.41e-01 71.9% 68.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.58 45.0 3.83e-01 86.0% 73.4%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 40.0 3.82e-01 77.2% 87.3%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 3.30e-01 82.5% 57.3%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 38.0 3.26e-01 70.2% 59.6%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 41.0 3.04e-01 78.9% 42.6%
2vm9A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 2.94e-01 73.7% 40.9%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.26e-01 75.4% 64.3%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 40.0 2.97e-01 77.2% 54.4%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.55 37.0 3.13e-01 71.9% 53.8%
3on7B00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.55 38.0 2.51e-01 75.4% 19.8%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 3.42e-01 75.4% 81.9%
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 47.0 3.64e-01 100.0% 86.8%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 37.0 2.99e-01 73.7% 66.4%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 38.0 3.23e-01 78.9% 81.0%
3gd0A01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.53 39.0 2.67e-01 82.5% 40.4%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 41.0 2.47e-01 91.2% 65.4%
7sz2A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 37.0 3.22e-01 75.4% 88.0%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 2.93e-01 73.7% 36.1%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 35.0 2.55e-01 73.7% 97.3%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 35.0 3.07e-01 73.7% 64.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 43.0 3.56e-01 91.2% 60.2%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 39.0 3.40e-01 86.0% 88.3%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 35.0 2.81e-01 73.7% 48.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3259959 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.02e-01 77.2% 69.0%
3798429 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.66 44.0 3.80e-01 70.2% 54.7%
3233159 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.65 44.0 3.55e-01 70.2% 42.7%
3222026 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.63 43.0 3.47e-01 70.2% 41.7%
5039912 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 43.0 3.52e-01 73.7% 41.7%
4939562 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.61 43.0 4.14e-01 73.7% 95.4%
4982454 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.61 42.0 4.13e-01 71.9% 98.3%
3847908 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 44.0 3.61e-01 80.7% 52.2%
3595803 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 46.0 4.62e-01 93.0% 82.8%
3515228 11.1.1.813 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS4_C 0.60 48.0 3.82e-01 93.0% 63.3%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.09e-01 73.7% 88.3%
3346140 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 47.0 4.02e-01 89.5% 73.7%
3242725 10.10.1.0 ↗ beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.59 41.0 3.40e-01 75.4% 61.8%
3258223 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 3.60e-01 84.2% 64.5%
4221708 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 43.0 4.09e-01 82.5% 90.0%
4680909 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.57 40.0 2.59e-01 78.9% 33.7%
3959732 10.39.1.0 ↗ beta sandwiches › jelly-roll › Soluble domain of MmpS4 › Soluble domain of MmpS4 0.56 37.0 3.37e-01 70.2% 90.6%
3231401 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 40.0 3.07e-01 80.7% 51.7%
3225550 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.11e-01 77.2% 50.8%
4169665 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.50 42.0 2.57e-01 93.0% 91.7%