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OQ587941.1__WGL30681.1__SCRES3_gp24__00024

Bact-Vir

OQ587941.1__WGL30681.1__SCRES3_gp24__00024

Identity

Accession:
OQ587941 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-CRES3

TaxID: 3038222

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-54
PDB
Domain cluster: rep: NC_028835.1__YP_009201837.1__CL2_42__00042__D139-181
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gccA00 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.86 77.0 6.82e-01 100.0% 69.8%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.85 76.0 6.92e-01 100.0% 75.9%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.80 69.0 6.02e-01 100.0% 64.3%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.73 62.0 4.87e-01 100.0% 55.4%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.70 50.0 3.97e-01 77.8% 92.9%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.70 52.0 4.03e-01 84.4% 95.4%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 50.0 4.49e-01 80.0% 58.5%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 57.0 4.93e-01 100.0% 73.7%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 52.0 4.26e-01 100.0% 45.4%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.65 54.0 3.94e-01 100.0% 43.8%
2ec4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 52.0 3.65e-01 100.0% 67.3%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.62 54.0 3.97e-01 100.0% 41.0%
2dt8A02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.62 53.0 3.86e-01 100.0% 46.2%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.61 49.0 2.92e-01 93.3% 20.8%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.61 41.0 4.13e-01 77.8% 73.3%
1wx8A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 43.0 3.42e-01 75.6% 36.5%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 39.0 2.77e-01 100.0% 19.6%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 41.0 3.52e-01 75.6% 54.4%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 40.0 2.79e-01 97.8% 20.6%
3kk4A01 1.10.3990.20 Mainly Alpha › Orthogonal Bundle › Ribbon-helix-helix fold › protein bp1543 0.57 48.0 3.73e-01 100.0% 64.2%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 43.0 2.93e-01 84.4% 81.5%
1wggA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 40.0 3.53e-01 77.8% 50.7%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 41.0 2.79e-01 80.0% 61.3%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.56 46.0 2.76e-01 93.3% 82.9%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.45e-01 80.0% 48.1%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.58e-01 100.0% 21.6%
1m6uA00 2.60.40.1390 Mainly Beta › Sandwich › Immunoglobulin-like › NDT80 DNA-binding domain 0.55 44.0 2.83e-01 97.8% 83.4%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 3.92e-01 100.0% 89.4%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 38.0 3.17e-01 77.8% 85.3%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 3.42e-01 100.0% 86.2%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 3.48e-01 100.0% 39.8%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.53 36.0 2.63e-01 80.0% 21.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.08e-01 84.4% 57.3%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 40.0 3.31e-01 97.8% 83.7%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 41.0 3.04e-01 97.8% 55.6%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.51 38.0 3.63e-01 84.4% 81.8%
7ocxC01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 35.0 2.91e-01 71.1% 86.8%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.51 37.0 3.19e-01 91.1% 84.6%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 36.0 2.72e-01 93.3% 51.8%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 35.0 2.74e-01 97.8% 31.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827127 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.94 80.0 6.07e-01 100.0% 43.2%
3331331 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.92 78.0 5.83e-01 100.0% 41.0%
3370971 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.92 84.0 6.54e-01 100.0% 56.7%
3813458 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.91 81.0 7.78e-01 100.0% 86.0%
3671921 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.90 78.0 7.24e-01 100.0% 76.4%
3334492 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.88 72.0 5.85e-01 100.0% 50.0%
3661849 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.88 75.0 6.65e-01 100.0% 66.7%
3664743 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.88 77.0 5.89e-01 100.0% 45.3%
3831192 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.87 76.0 6.07e-01 100.0% 50.6%
3440839 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.87 77.0 5.76e-01 100.0% 43.0%
3293480 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.87 76.0 6.64e-01 100.0% 66.2%
3682141 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.87 77.0 7.43e-01 100.0% 86.0%
3467141 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.86 75.0 5.49e-01 100.0% 39.1%
3425673 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.86 74.0 7.11e-01 97.8% 84.0%
3468885 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.85 77.0 6.21e-01 100.0% 55.0%
3965886 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.84 68.0 6.90e-01 95.6% 88.9%
3380188 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.84 74.0 6.89e-01 100.0% 78.2%
3299337 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.83 71.0 5.47e-01 100.0% 43.9%
3943930 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.82 71.0 6.89e-01 100.0% 86.0%
3221077 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.76 67.0 5.55e-01 100.0% 56.2%
3815823 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 61.0 5.01e-01 100.0% 48.9%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.74 62.0 5.88e-01 100.0% 78.2%
5041477 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.74 53.0 4.87e-01 77.8% 100.0%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.73 61.0 5.79e-01 100.0% 78.2%
3327575 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.73 64.0 4.99e-01 100.0% 45.0%
3700429 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.73 61.0 4.42e-01 100.0% 32.9%
3348638 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 60.0 4.55e-01 100.0% 38.3%
3299579 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 58.0 5.14e-01 100.0% 61.4%
3669022 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 61.0 4.78e-01 100.0% 46.3%
3974688 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.70 60.0 5.86e-01 100.0% 88.0%
3624850 331.9.1.9 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.70 55.0 4.24e-01 88.9% 83.8%
3727070 206.1.1.15 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.69 57.0 3.50e-01 95.6% 15.8%
3313861 4325.1.1.10 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF659 0.69 59.0 5.59e-01 100.0% 98.2%
3977489 377.1.1.117 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 0.68 47.0 4.61e-01 75.6% 74.0%
3312151 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 57.0 4.01e-01 100.0% 29.7%
3723396 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 47.0 4.01e-01 77.8% 46.3%
3679236 2484.1.1.106 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 0.66 54.0 3.19e-01 100.0% 13.3%
4009814 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.66 53.0 4.89e-01 100.0% 83.1%
4134161 301.13.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.65 53.0 3.94e-01 100.0% 45.2%
4944239 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.63 53.0 3.91e-01 100.0% 46.2%
4946414 301.13.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.63 53.0 3.98e-01 100.0% 49.6%
4959767 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.62 48.0 4.42e-01 86.7% 100.0%
4268395 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.62 45.0 3.81e-01 86.7% 42.7%
3786489 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 42.0 2.57e-01 75.6% 19.7%
3605369 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.31e-01 82.2% 70.9%
5018702 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.61 44.0 3.62e-01 80.0% 67.8%
4032678 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 50.0 4.02e-01 100.0% 79.0%
3258474 221.1.1.44 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.59 44.0 3.55e-01 80.0% 42.0%
3280648 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 2.94e-01 91.1% 38.7%
5045772 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.47e-01 88.9% 36.5%
3697241 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.59 48.0 4.61e-01 93.3% 90.6%
3397689 243.1.1.91 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4518 0.56 44.0 3.18e-01 97.8% 36.9%
3640089 206.1.1.34 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase_fungal 0.56 44.0 2.74e-01 97.8% 52.1%
3710998 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 43.0 2.42e-01 86.7% 16.9%
5020150 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.55 38.0 3.36e-01 82.2% 47.1%
3968902 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.54 39.0 2.58e-01 84.4% 32.9%
3960039 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.54 39.0 2.38e-01 75.6% 15.7%
3248306 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 39.0 3.30e-01 88.9% 42.4%
3799509 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.54 39.0 2.65e-01 100.0% 18.1%
3242648 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 41.0 2.87e-01 93.3% 38.9%
3805761 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.54 43.0 3.60e-01 100.0% 52.0%
4951383 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.53 37.0 3.30e-01 82.2% 71.2%
3261872 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 39.0 3.47e-01 88.9% 53.3%
3783916 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 3.72e-01 84.4% 70.9%
4027120 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 39.0 2.87e-01 82.2% 83.8%
5028281 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.52 37.0 2.50e-01 75.6% 95.3%
3405466 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 41.0 2.97e-01 100.0% 81.2%
3604095 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.50 39.0 3.13e-01 93.3% 48.6%
3494392 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.50 43.0 2.57e-01 100.0% 71.6%
5049119 221.10.1.1 ↗ a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.50 38.0 3.30e-01 95.6% 72.9%