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OQ594354.1__WEV89198.1__X__00011

Bact-Vir

OQ594354.1__WEV89198.1__X__00011

Identity

Accession:
OQ594354 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_MinM2

TaxID: 3035943

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-132
PDB
Domain cluster: rep: NC_019408.1__YP_006989129.1__D869_gp332__00100__D20-163
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 47.0 5.49e-01 73.6% 96.6%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 5.06e-01 74.4% 92.7%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.59 39.0 4.19e-01 96.1% 79.2%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 40.0 3.74e-01 72.1% 72.6%
4co9A00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.53 37.0 3.16e-01 71.3% 58.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942383 520.2.1.0 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.91 62.0 7.44e-01 75.2% 100.0%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 47.0 5.56e-01 73.6% 100.0%
4561709 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.63 43.0 5.01e-01 71.3% 100.0%
3417051 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.53 41.0 2.81e-01 81.4% 22.9%
4331893 207.6.1.15 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › RTX 0.52 38.0 3.72e-01 77.5% 82.8%
3840065 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.51 42.0 3.52e-01 89.1% 90.0%
4472803 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.51 37.0 4.13e-01 96.1% 99.0%
4121946 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.51 39.0 3.72e-01 80.6% 92.9%
3492291 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.51 40.0 3.73e-01 84.5% 76.7%
3281086 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.50 40.0 3.82e-01 83.7% 82.7%
D2 high residues 244-296
PDB
Domain cluster: rep: MZ326863.1__QYW02340.1__CPT_Paku_046__00046__D273-322
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.77 68.0 3.87e-01 100.0% 11.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.65 56.0 4.16e-01 100.0% 48.2%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 56.0 3.85e-01 100.0% 82.8%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 45.0 2.98e-01 77.4% 29.5%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 3.91e-01 92.5% 42.0%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.62 49.0 3.80e-01 92.5% 37.8%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.35e-01 84.9% 82.8%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.60 51.0 4.06e-01 96.2% 51.8%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.59 42.0 3.73e-01 83.0% 51.2%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.38e-01 92.5% 36.8%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 2.88e-01 77.4% 26.1%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 48.0 3.32e-01 100.0% 32.4%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.56 41.0 3.88e-01 96.2% 63.6%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.55 40.0 3.43e-01 90.6% 45.3%
2iafA00 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.55 40.0 3.05e-01 79.2% 76.4%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.54 39.0 3.61e-01 94.3% 58.1%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 43.0 3.97e-01 94.3% 67.6%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.07e-01 94.3% 30.3%
5c5cA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 42.0 3.15e-01 96.2% 45.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.53 44.0 3.68e-01 96.2% 74.7%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 2.79e-01 81.1% 29.0%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 2.98e-01 88.7% 85.4%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.03e-01 83.0% 53.2%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.44e-01 94.3% 52.3%
2kczA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.20e-01 100.0% 49.0%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 3.53e-01 92.5% 65.6%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 38.0 3.24e-01 84.9% 48.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 3.93e-01 92.5% 79.7%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.51 41.0 3.73e-01 100.0% 79.3%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.19e-01 100.0% 38.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.24e-01 75.5% 56.9%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.38e-01 79.2% 75.0%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 40.0 2.96e-01 96.2% 45.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3638371 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 52.0 3.37e-01 81.1% 62.3%
360186 809.1.1.2 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › BLIP 0.63 47.0 4.23e-01 96.2% 58.9%
4975626 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 54.0 3.98e-01 100.0% 39.2%
3755983 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.62 50.0 4.27e-01 96.2% 52.6%
4942210 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.62 46.0 3.24e-01 81.1% 31.2%
4348598 3894.1.1.6 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Glyco_trans_A_1 0.62 54.0 4.03e-01 100.0% 39.3%
4934598 244.4.1.2 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.61 50.0 4.18e-01 94.3% 60.0%
3587060 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 47.0 4.21e-01 90.6% 61.3%
3944465 809.1.1.7 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 0.60 46.0 4.01e-01 86.8% 60.0%
3061339 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.60 50.0 3.01e-01 100.0% 33.4%
3849532 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.59 48.0 3.34e-01 98.1% 41.4%
3403871 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.59 48.0 3.35e-01 100.0% 70.2%
3934930 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.59 48.0 3.38e-01 100.0% 91.0%
3616467 5.1.12.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › eIF2A 0.58 47.0 2.77e-01 96.2% 10.4%
5043802 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 48.0 3.80e-01 100.0% 45.2%
3389834 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.56 46.0 3.16e-01 100.0% 33.6%
3457400 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.55 43.0 3.88e-01 88.7% 61.3%
3524397 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 48.0 3.25e-01 100.0% 33.3%
5055952 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 44.0 2.70e-01 88.7% 25.1%
3516546 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.54 45.0 3.18e-01 100.0% 47.9%
4938162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.59e-01 98.1% 51.1%
3549809 389.1.1.105 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_rec_like, Ephrin_CRD 0.53 42.0 3.26e-01 94.3% 65.2%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 37.0 3.57e-01 77.4% 78.5%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.46e-01 79.2% 72.9%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.50e-01 79.2% 81.5%
4983396 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 39.0 3.69e-01 96.2% 68.6%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.50 37.0 3.18e-01 81.1% 62.2%
3838444 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 36.0 3.32e-01 100.0% 55.0%
5071115 2484.4.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.50 36.0 2.91e-01 81.1% 44.2%
D3 high residues 328-409
PDB
Domain cluster: rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 27.5 4.30e-06 50.0% 74.1%