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OQ594354.1__WEV89232.1__X__00045
Bact-VirOQ594354.1__WEV89232.1__X__00045
Identity
- Accession:
- OQ594354 ↗
- Kingdom:
- phage
Quality
88.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-78
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tufA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.64 | 50.0 | 3.52e-01 | 88.7% | 43.8% |
| 1cksB00 | 3.30.170.10 | Alpha Beta › 2-Layer Sandwich › Cyclin-Dependent Kinase Subunit Type 2 › Cyclin-dependent kinase, regulatory subunit | 0.63 | 46.0 | 4.14e-01 | 81.1% | 59.0% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.60 | 46.0 | 3.88e-01 | 84.9% | 57.0% |
| 2k3dA00 | 3.10.450.130 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains | 0.60 | 43.0 | 3.68e-01 | 77.4% | 71.3% |
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.60 | 37.0 | 3.59e-01 | 84.9% | 54.0% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.57 | 42.0 | 3.57e-01 | 100.0% | 46.2% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 40.0 | 2.60e-01 | 84.9% | 24.8% |
| 2b0aA00 | 3.50.30.50 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase | 0.54 | 43.0 | 3.08e-01 | 96.2% | 94.1% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 39.0 | 3.56e-01 | 98.1% | 57.9% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 36.0 | 2.67e-01 | 75.5% | 36.2% |
| 1ub4C00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.52 | 36.0 | 3.36e-01 | 79.2% | 54.7% |
| 1m0sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 37.0 | 3.42e-01 | 79.2% | 59.7% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 43.0 | 3.83e-01 | 98.1% | 69.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052672 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.69 | 48.0 | 4.37e-01 | 75.5% | 55.7% |
| 3957937 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.66 | 51.0 | 4.35e-01 | 84.9% | 58.8% |
| 1230708 | 811.1.1.0 ↗ | a+b complex topology › Cell cycle regulatory proteins › Cell cycle regulatory proteins › Cell cycle regulatory proteins | 0.63 | 47.0 | 4.26e-01 | 83.0% | 63.5% |
| 4963939 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.60 | 43.0 | 4.09e-01 | 77.4% | 63.1% |
| 3675128 | 304.9.1.20 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 | 0.60 | 42.0 | 3.95e-01 | 77.4% | 60.0% |
| 3577681 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.58 | 41.0 | 2.68e-01 | 77.4% | 91.7% |
| 3932556 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.56 | 40.0 | 2.57e-01 | 75.5% | 90.7% |
| 4069543 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.54 | 43.0 | 3.86e-01 | 92.5% | 62.7% |
| 5012054 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.54 | 38.0 | 3.56e-01 | 81.1% | 58.6% |
| 3257433 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 34.0 | 2.51e-01 | 94.3% | 25.9% |
| 3675646 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 37.0 | 2.48e-01 | 79.2% | 26.7% |
| 3366806 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 38.0 | 2.56e-01 | 83.0% | 56.7% |
| 4977171 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.51 | 38.0 | 3.80e-01 | 83.0% | 90.7% |
| 3984485 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.51 | 36.0 | 3.28e-01 | 79.2% | 56.2% |
| 3796474 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 35.0 | 3.35e-01 | 75.5% | 58.8% |
| 4943937 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.50 | 33.0 | 3.22e-01 | 77.4% | 56.9% |
D2
high
residues 86-156
Domain cluster:
rep: OR545055.1__WOZ55967.1__P44_00046__00046__D3-75
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yleA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.59 | 40.0 | 3.08e-01 | 70.4% | 77.2% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 52.0 | 4.60e-01 | 100.0% | 69.6% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 52.0 | 4.64e-01 | 100.0% | 71.0% |
| 3vldA02 | 1.25.40.580 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 34.0 | 2.67e-01 | 71.8% | 26.8% |
| 1tk5A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.57 | 44.0 | 4.01e-01 | 85.9% | 85.9% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 36.0 | 3.96e-01 | 81.7% | 79.3% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.56 | 49.0 | 4.39e-01 | 100.0% | 68.6% |
| 4i16A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 47.0 | 4.49e-01 | 100.0% | 88.9% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 47.0 | 3.98e-01 | 100.0% | 84.9% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.55 | 48.0 | 4.27e-01 | 100.0% | 68.6% |
| 1gvnA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 47.0 | 4.49e-01 | 100.0% | 85.1% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.54 | 46.0 | 3.83e-01 | 98.6% | 75.7% |
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.54 | 32.0 | 3.28e-01 | 71.8% | 58.6% |
| 1oahA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 45.0 | 3.68e-01 | 100.0% | 57.7% |
| 5c9eB01 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 32.0 | 3.04e-01 | 73.2% | 49.4% |
| 1xd3C00 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.52 | 44.0 | 3.17e-01 | 97.2% | 68.7% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.81e-01 | 84.5% | 79.1% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 3.59e-01 | 85.9% | 72.9% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.67e-01 | 83.1% | 77.6% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 37.0 | 3.00e-01 | 77.5% | 75.9% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 43.0 | 3.80e-01 | 100.0% | 86.0% |
| 2icwG01 | 1.20.120.390 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1 | 0.51 | 42.0 | 3.66e-01 | 100.0% | 59.7% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.50 | 34.0 | 3.11e-01 | 77.5% | 50.5% |
| 1s0pA01 | 1.25.40.330 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain | 0.50 | 39.0 | 3.13e-01 | 91.5% | 81.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988961 | 129.1.1.16 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 | 0.62 | 38.0 | 3.15e-01 | 71.8% | 34.7% |
| 4309138 | 604.6.1.37 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › PF30537 | 0.60 | 41.0 | 4.27e-01 | 80.3% | 78.5% |
| 3806870 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.59 | 35.0 | 3.15e-01 | 70.4% | 43.0% |
| 4970630 | 109.61.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Uncharacterized protein PF2048.1 › Uncharacterized protein PF2048.1 › MJ1579 | 0.57 | 36.0 | 3.59e-01 | 93.0% | 60.0% |
| 4937698 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.56 | 43.0 | 3.36e-01 | 84.5% | 52.1% |
| 3941508 | 148.1.3.57 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5375 | 0.56 | 47.0 | 4.31e-01 | 95.8% | 73.7% |
| 4143568 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.56 | 38.0 | 3.54e-01 | 73.2% | 56.7% |
| 4606236 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.54 | 39.0 | 3.57e-01 | 77.5% | 58.9% |
| 5065515 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 45.0 | 4.18e-01 | 100.0% | 92.6% |
| 3972272 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.53 | 37.0 | 3.63e-01 | 94.4% | 68.0% |
| 3944331 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.52 | 35.0 | 3.42e-01 | 84.5% | 62.5% |
| 3193537 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 45.0 | 3.30e-01 | 100.0% | 38.0% |
| 3936918 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.50 | 38.0 | 2.94e-01 | 84.5% | 73.7% |
| 3973441 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.50 | 35.0 | 3.28e-01 | 80.3% | 57.8% |