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OQ594355.1__WEV89335.1__H10PHJ05_34__00034

Bact-Vir

OQ594355.1__WEV89335.1__H10PHJ05_34__00034

Identity

Accession:
OQ594355 ↗
Kingdom:
phage

Quality

67.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aeromonas_phage_HJ05

TaxID: 3035942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-79
PDB
Domain cluster: rep: NC_023502.1__YP_009003180.1__CC53_gp023__00023__D12-72
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.91 63.0 7.28e-01 100.0% 100.0%
6scxC01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.59 41.0 3.14e-01 75.0% 72.7%
3tqvA01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.58 49.0 4.01e-01 100.0% 70.7%
3l0gB01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.58 48.0 4.08e-01 100.0% 76.3%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 3.28e-01 84.4% 94.2%
1y7xA01 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.55 35.0 3.96e-01 100.0% 91.5%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 3.13e-01 87.5% 89.2%
6njyA01 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 45.0 3.73e-01 96.9% 100.0%
6xw5A01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.53 42.0 3.17e-01 90.6% 45.7%
1xeuA02 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 4.09e-01 100.0% 86.7%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 2.78e-01 100.0% 69.4%
2kviA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 43.0 4.11e-01 100.0% 94.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009 4076.3.1.2 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.91 63.0 7.09e-01 100.0% 93.9%
4956454 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 53.0 5.61e-01 100.0% 83.6%
5083883 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 50.0 5.64e-01 100.0% 100.0%
5023430 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.73 55.0 5.67e-01 100.0% 86.7%
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 35.0 2.85e-01 82.8% 33.0%
3236563 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.58 34.0 2.74e-01 82.8% 30.4%
4241274 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 48.0 2.98e-01 100.0% 35.1%
4486052 304.48.1.39 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.57 47.0 3.07e-01 100.0% 50.9%
4967853 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 27.0 2.94e-01 89.1% 47.3%
5047366 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.55 39.0 2.82e-01 78.1% 53.3%
4136078 3943.1.1.2 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › FliD_C 0.53 38.0 3.46e-01 76.6% 91.1%
3678489 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 44.0 3.24e-01 100.0% 59.5%
4112665 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.53 41.0 3.53e-01 87.5% 88.2%
3642597 109.4.1.498 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487 0.53 40.0 2.43e-01 85.9% 30.4%
4798770 5097.1.1.3 ↗ beta sandwiches › Middle beta-sandwich domain in anthrax protective antigen › Middle beta-sandwich domain in anthrax protective antigen › Middle beta-sandwich domain in anthrax protective antigen › Binary_toxB_2, Binary_toxB_3 0.52 37.0 2.80e-01 78.1% 77.7%
3905833 304.8.1.54 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 0.52 44.0 3.98e-01 100.0% 94.7%
3847767 304.9.1.129 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › NID, IFP_35_N 0.51 29.0 2.76e-01 92.2% 41.2%
3225850 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 38.0 4.19e-01 98.4% 100.0%
2949317 205.1.1.44 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_11 0.50 37.0 3.57e-01 90.6% 69.3%
4238039 101.1.1.68 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.50 41.0 4.20e-01 89.1% 98.3%