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OQ622096.1__WGH28508.1__13VV501A_gene0011__00010

Bact-Vir

OQ622096.1__WGH28508.1__13VV501A_gene0011__00010

Identity

Accession:
OQ622096 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_13VV501A

TaxID: 3038236

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-98
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.74 48.0 4.88e-01 94.3% 67.4%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.63 52.0 3.89e-01 89.8% 54.0%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 52.0 3.91e-01 100.0% 41.7%
3w3aG00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 50.0 3.75e-01 94.3% 95.7%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 34.0 3.68e-01 72.7% 75.0%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 37.0 3.28e-01 71.6% 78.4%
4l8kD02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 35.0 2.72e-01 72.7% 65.3%
4bhbA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.51 30.0 3.32e-01 75.0% 72.9%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.50 34.0 2.36e-01 70.5% 97.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3857887 5094.1.1.11 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.71 41.0 4.41e-01 85.2% 66.7%
5012709 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 47.0 3.36e-01 98.9% 26.0%
4013484 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.67 55.0 4.22e-01 90.9% 83.4%
4976626 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.66 53.0 3.89e-01 98.9% 33.8%
4541963 327.6.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.65 31.0 2.77e-01 76.1% 30.4%
4083043 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.63 52.0 3.89e-01 98.9% 37.3%
5000798 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.62 52.0 3.96e-01 87.5% 49.2%
3281042 601.23.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › PF31110 0.60 54.0 3.93e-01 100.0% 42.0%
5078639 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.60 54.0 4.16e-01 98.9% 100.0%
4943172 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 48.0 3.67e-01 86.4% 49.5%
3207096 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 49.0 3.57e-01 87.5% 43.0%
3228638 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.59 53.0 3.45e-01 96.6% 88.9%
5056727 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 50.0 3.77e-01 98.9% 39.0%
4981316 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 51.0 3.87e-01 100.0% 41.5%
3900384 633.21.1.26 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › L6_membrane 0.57 46.0 3.66e-01 88.6% 47.8%
4961983 3755.1.1.32 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D 0.56 50.0 3.62e-01 95.5% 53.9%
4454311 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.56 47.0 4.50e-01 95.5% 79.0%
3560901 601.19.1.20 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.56 43.0 4.60e-01 81.8% 100.0%
4171356 2495.1.1.0 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain 0.55 31.0 2.91e-01 73.9% 42.7%
3241420 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 48.0 3.21e-01 100.0% 61.2%
3228394 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 23.0 3.07e-01 73.9% 73.3%
3385032 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 24.0 3.22e-01 78.4% 82.2%
1247620 101.1.1.72 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GP3_package 0.52 42.0 3.59e-01 85.2% 79.9%
3843680 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.51 41.0 2.56e-01 89.8% 50.6%