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OQ622096.1__WGH28541.1__13VV501A_gene0045__00043

Bact-Vir

OQ622096.1__WGH28541.1__13VV501A_gene0045__00043

Identity

Accession:
OQ622096 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_13VV501A

TaxID: 3038236

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-96
PDB
Domain cluster: rep: OP296522.1__UYD72065.1__VG_p17__00017__D58-122
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.82 76.0 5.93e-01 100.0% 52.0%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.79 71.0 5.38e-01 100.0% 89.1%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.71 61.0 4.26e-01 98.4% 39.0%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.67 43.0 5.10e-01 82.5% 100.0%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 58.0 4.02e-01 100.0% 45.9%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 58.0 4.72e-01 100.0% 63.7%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.66 57.0 4.94e-01 100.0% 98.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 48.0 4.09e-01 79.4% 88.8%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 42.0 4.07e-01 93.7% 61.1%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 46.0 4.00e-01 79.4% 85.9%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.62 48.0 3.87e-01 87.3% 96.2%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.92e-01 85.7% 86.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.05e-01 73.0% 86.5%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 4.16e-01 100.0% 74.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.59e-01 93.7% 78.3%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 46.0 4.15e-01 93.7% 61.2%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 47.0 4.26e-01 88.9% 94.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.49e-01 87.3% 100.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.73e-01 98.4% 91.9%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.57 47.0 3.82e-01 98.4% 94.9%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.48e-01 84.1% 82.0%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.57 44.0 3.76e-01 92.1% 72.3%
3su0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 3.89e-01 93.7% 83.0%
8e7cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 4.05e-01 85.7% 69.1%
2zu2A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 43.0 3.75e-01 84.1% 83.7%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 3.96e-01 95.2% 88.0%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.84e-01 85.7% 91.2%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.38e-01 87.3% 62.4%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 40.0 2.96e-01 77.8% 94.8%
2o8mB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 45.0 4.47e-01 90.5% 95.5%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.13e-01 88.9% 100.0%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 46.0 4.68e-01 92.1% 100.0%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 39.0 2.89e-01 92.1% 27.9%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 45.0 3.43e-01 95.2% 95.5%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.54e-01 100.0% 85.8%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.61e-01 84.1% 82.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.81e-01 87.3% 89.5%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.54 36.0 3.44e-01 96.8% 58.7%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.52e-01 88.9% 86.8%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.48e-01 88.9% 81.4%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.29e-01 100.0% 93.8%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 43.0 3.51e-01 98.4% 80.6%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.41e-01 85.7% 82.4%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.27e-01 87.3% 76.6%
2h0bC00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.21e-01 100.0% 95.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.63e-01 87.3% 87.4%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.24e-01 87.3% 70.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 41.0 3.57e-01 93.7% 76.5%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 39.0 2.86e-01 92.1% 30.0%
1eh7A01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.50 35.0 3.45e-01 76.2% 75.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2770320 219.1.1.39 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1175 0.77 68.0 4.84e-01 100.0% 41.7%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.69 60.0 4.35e-01 100.0% 42.2%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 60.0 4.70e-01 100.0% 48.9%
3662509 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.67 57.0 4.63e-01 93.7% 85.2%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 56.0 4.50e-01 100.0% 54.6%
3926623 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.65 57.0 5.45e-01 100.0% 98.6%
3453949 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 55.0 3.58e-01 100.0% 31.6%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 50.0 5.25e-01 96.8% 98.2%
4991638 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.63 51.0 3.25e-01 87.3% 70.2%
3399870 219.1.1.24 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.63 53.0 3.75e-01 100.0% 52.4%
3971733 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.61 49.0 3.11e-01 87.3% 69.7%
3626739 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.33e-01 90.5% 74.5%
5009412 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.61 49.0 3.22e-01 87.3% 64.6%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 3.59e-01 92.1% 35.5%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.60 45.0 4.79e-01 92.1% 96.4%
3758150 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.50e-01 93.7% 89.9%
4468497 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.59 40.0 3.40e-01 71.4% 65.7%
4177358 4947.1.1.1 ↗ a+b complex topology › barrel domain in MalF N-terminal region › barrel domain in MalF N-terminal region › barrel domain in MalF N-terminal region › MalF_P2 0.58 45.0 4.08e-01 87.3% 93.3%
4287411 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.58 47.0 4.47e-01 95.2% 77.5%
5002574 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 47.0 4.23e-01 90.5% 64.4%
3213121 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.58 47.0 4.55e-01 98.4% 96.0%
3901690 11.1.1.216 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_5 0.57 44.0 4.12e-01 95.2% 66.3%
4014486 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.57 45.0 3.27e-01 90.5% 36.5%
5038472 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 49.0 4.05e-01 95.2% 70.9%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.56e-01 84.1% 67.5%
3266698 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 48.0 3.86e-01 100.0% 62.2%
4044230 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 43.0 3.19e-01 85.7% 73.3%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.56 47.0 4.51e-01 96.8% 84.0%
3601162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.26e-01 87.3% 83.1%
3921189 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.56 46.0 3.46e-01 98.4% 81.7%
3708055 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 42.0 4.22e-01 88.9% 83.1%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 46.0 4.40e-01 95.2% 80.0%
3778135 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 43.0 3.34e-01 87.3% 63.3%
5004623 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.76e-01 85.7% 84.2%
4971601 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.55 41.0 4.01e-01 82.5% 90.0%
3523477 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 42.0 3.12e-01 87.3% 46.5%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 42.0 3.62e-01 90.5% 68.7%
3186280 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 46.0 3.22e-01 96.8% 52.1%
3902810 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.54 40.0 3.39e-01 85.7% 78.4%
4203469 375.1.1.47 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.54 42.0 4.43e-01 84.1% 94.5%
3264236 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 40.0 3.56e-01 85.7% 79.0%
3922536 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 40.0 3.16e-01 87.3% 57.4%
3742641 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.53 40.0 3.49e-01 88.9% 69.1%
3544813 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 42.0 3.23e-01 98.4% 77.8%
4955468 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 44.0 3.18e-01 95.2% 84.1%
3170306 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.53 40.0 3.29e-01 88.9% 82.2%
3204035 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.53 45.0 2.86e-01 96.8% 24.4%
3995797 220.1.1.160 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.52 38.0 3.80e-01 81.0% 87.7%
3198252 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.52 44.0 3.33e-01 98.4% 44.1%
2324014 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 42.0 3.18e-01 98.4% 74.5%
3934183 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.52 40.0 3.53e-01 88.9% 91.4%
3411618 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 42.0 3.05e-01 98.4% 62.7%
3719720 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.52 40.0 2.46e-01 88.9% 20.4%
3210702 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.52 43.0 2.92e-01 100.0% 64.6%
3910955 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 41.0 3.03e-01 98.4% 76.2%
3259128 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.50 38.0 3.23e-01 88.9% 61.6%
3282204 11.9.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.50 43.0 2.88e-01 100.0% 61.8%
3571636 206.1.3.35 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF5565 0.50 42.0 2.92e-01 98.4% 27.3%