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OQ622096.1__WGH28567.1__13VV501A_gene0071__00069

Bact-Vir

OQ622096.1__WGH28567.1__13VV501A_gene0071__00069

Identity

Accession:
OQ622096 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_13VV501A

TaxID: 3038236

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 49.0 4.78e-01 83.1% 66.7%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.29e-01 98.6% 85.5%
3q9vA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.04e-01 97.2% 66.3%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.85e-01 78.9% 80.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.92e-01 98.6% 78.0%
2cfoA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 50.0 4.44e-01 88.7% 77.9%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.62 51.0 4.19e-01 94.4% 63.0%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 48.0 4.45e-01 88.7% 84.9%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.70e-01 93.0% 78.0%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 42.0 4.15e-01 80.3% 75.6%
1u3dA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 49.0 4.00e-01 95.8% 52.2%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 49.0 3.63e-01 100.0% 58.4%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 41.0 4.32e-01 80.3% 95.0%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.56 46.0 3.71e-01 100.0% 85.3%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 47.0 4.07e-01 95.8% 79.5%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 40.0 3.51e-01 77.5% 88.1%
3wa8B00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.55 47.0 3.58e-01 98.6% 69.1%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.72e-01 80.3% 89.4%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 38.0 3.47e-01 94.4% 53.5%
2of7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 44.0 3.72e-01 100.0% 79.3%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.53 46.0 3.71e-01 97.2% 83.0%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 47.0 3.40e-01 100.0% 49.3%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.53 45.0 2.92e-01 97.2% 30.4%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 43.0 3.88e-01 97.2% 75.7%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 44.0 3.61e-01 91.5% 81.5%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.53 46.0 4.34e-01 98.6% 85.9%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 45.0 3.70e-01 97.2% 85.1%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.51 40.0 3.46e-01 83.1% 81.1%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.51 41.0 3.94e-01 90.1% 75.9%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.51 35.0 3.12e-01 73.2% 82.1%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.51 42.0 3.63e-01 100.0% 91.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3672635 101.1.1.295 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.73 57.0 5.65e-01 85.9% 81.3%
3840404 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.72 52.0 5.56e-01 83.1% 91.7%
3462913 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.72 55.0 5.70e-01 83.1% 90.8%
3764771 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.72 51.0 5.52e-01 90.1% 96.4%
3337263 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.71 55.0 5.07e-01 83.1% 80.0%
3903431 101.35.1.29 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DEK_C 0.71 53.0 5.64e-01 85.9% 93.3%
3882320 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.71 52.0 5.60e-01 85.9% 93.3%
3735853 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.70 50.0 5.34e-01 77.5% 90.0%
3389605 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.70 53.0 3.74e-01 83.1% 25.8%
4390290 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 51.0 5.30e-01 90.1% 86.2%
3806111 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.70 53.0 5.48e-01 83.1% 90.8%
3740124 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.70 50.0 5.50e-01 83.1% 100.0%
3444283 101.1.2.365 ↗ alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.69 49.0 5.33e-01 74.6% 98.1%
4998572 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.02e-01 84.5% 69.4%
3631692 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.69 50.0 5.36e-01 83.1% 93.3%
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.69 51.0 5.39e-01 81.7% 95.0%
3177082 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 51.0 5.42e-01 80.3% 98.3%
3397182 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 49.0 5.33e-01 83.1% 100.0%
4438754 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 49.0 5.41e-01 91.5% 100.0%
3333032 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 49.0 5.24e-01 83.1% 94.8%
3475816 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 49.0 5.41e-01 83.1% 100.0%
5047394 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.66 46.0 3.48e-01 84.5% 30.2%
3782008 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.65 49.0 5.11e-01 85.9% 89.2%
3313260 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.65 49.0 4.96e-01 83.1% 84.3%
3249893 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 55.0 5.14e-01 100.0% 86.7%
3717244 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 5.26e-01 98.6% 95.7%
2507077 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.64 51.0 3.90e-01 90.1% 40.2%
4024983 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.76e-01 90.1% 75.0%
3965372 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.63 52.0 4.47e-01 94.4% 66.7%
3285621 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.63 52.0 5.05e-01 91.5% 86.3%
4091013 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.63 52.0 3.96e-01 94.4% 47.8%
3439642 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.18e-01 98.6% 47.9%
3327057 101.1.1.298 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 0.61 44.0 4.71e-01 81.7% 91.7%
3214721 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.61 49.0 4.60e-01 90.1% 97.8%
3652259 109.4.1.1655 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, HEAT, HEAT_2 0.59 43.0 3.00e-01 76.1% 30.2%
3636426 650.1.1.11 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › RPT 0.59 44.0 4.56e-01 100.0% 89.2%
4002034 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.56 40.0 3.64e-01 74.6% 68.4%
4011174 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.55 37.0 3.25e-01 80.3% 45.7%
1140569 101.34.1.1 ↗ alpha arrays › HTH › Transcription factor LEAFY › Transcription factor LEAFY › C_LFY_FLO 0.55 45.0 3.70e-01 100.0% 78.5%
3606098 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 41.0 3.48e-01 100.0% 44.6%
3741686 5067.1.1.5 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Sterol-sensing 0.55 44.0 3.18e-01 88.7% 94.9%
5019542 622.4.1.67 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › DUF5518 0.55 43.0 3.91e-01 87.3% 90.9%
4462283 3896.1.1.1 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CTP_transf_1 0.54 42.0 2.90e-01 85.9% 48.8%
3768461 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.54 41.0 3.94e-01 85.9% 71.8%
4026181 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.54 44.0 4.06e-01 95.8% 70.0%
3869172 5000.3.1.0 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death 0.52 46.0 3.58e-01 100.0% 51.9%
3594310 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.52 41.0 4.01e-01 85.9% 96.2%
5032080 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 43.0 3.72e-01 93.0% 66.1%
5027339 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.51 39.0 3.49e-01 80.3% 86.9%
3559937 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 38.0 3.38e-01 80.3% 87.6%
4075843 185.1.1.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.51 41.0 3.78e-01 98.6% 69.2%