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OQ622254.1__WEM05591.1__X__00002

Bact-Vir

OQ622254.1__WEM05591.1__X__00002

Identity

Accession:
OQ622254 ↗
Kingdom:
phage

Quality

80.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Gundecimvirus› Pseudomonas_phage_vB_PaeM-G11

TaxID: 3034915

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-127
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.85 68.0 6.77e-01 84.2% 82.9%
1vr4E00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.79 60.0 6.32e-01 79.2% 100.0%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.79 63.0 6.57e-01 84.2% 98.9%
4evuB00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.79 52.0 6.23e-01 79.2% 100.0%
2jz7A00 3.30.1660.30 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Selenium-binding protein 0.73 49.0 5.41e-01 81.2% 85.2%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.73 45.0 5.30e-01 70.3% 92.6%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.71 45.0 5.28e-01 71.3% 97.0%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.66 43.0 4.38e-01 76.2% 68.8%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 38.0 4.23e-01 100.0% 78.2%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 44.0 3.41e-01 100.0% 35.6%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 45.0 4.71e-01 100.0% 93.3%
1rc9A01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 45.0 3.73e-01 85.1% 80.6%
4g2uA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 46.0 3.66e-01 88.1% 72.9%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.91e-01 98.0% 72.6%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.80e-01 98.0% 67.0%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.56 46.0 3.45e-01 91.1% 83.5%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 40.0 4.17e-01 100.0% 86.0%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.79e-01 98.0% 70.3%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 47.0 3.75e-01 100.0% 57.1%
1yb2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.21e-01 100.0% 37.0%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.74e-01 97.0% 68.8%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 44.0 3.55e-01 100.0% 47.5%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.52 38.0 3.55e-01 87.1% 59.5%
3cjrB01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.52 30.0 3.48e-01 76.2% 81.4%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.52 44.0 4.03e-01 94.1% 86.0%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.70e-01 98.0% 70.9%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 43.0 3.49e-01 100.0% 48.2%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.50 43.0 3.96e-01 93.1% 89.1%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 44.0 3.37e-01 96.0% 100.0%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
416478 872.3.1.3 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › RcsF 0.85 68.0 6.77e-01 84.2% 82.9%
4330176 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.84 64.0 6.31e-01 79.2% 99.1%
4603167 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.84 64.0 6.35e-01 79.2% 97.1%
4579090 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.83 65.0 6.22e-01 82.2% 92.2%
4057787 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.82 61.0 6.10e-01 77.2% 100.0%
3959344 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.82 59.0 5.67e-01 74.3% 84.3%
5017604 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.82 63.0 6.64e-01 79.2% 97.8%
4462302 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.82 65.0 6.28e-01 82.2% 96.4%
4215969 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.82 66.0 6.30e-01 84.2% 96.5%
4180995 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.82 65.0 6.32e-01 83.2% 96.4%
4197423 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.81 64.0 6.20e-01 82.2% 96.4%
3955529 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.81 58.0 5.90e-01 74.3% 92.0%
180088 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.80 61.0 6.44e-01 79.2% 98.9%
3230024 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.78 63.0 4.17e-01 85.1% 64.6%
3492450 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.78 61.0 6.00e-01 82.2% 97.2%
3413091 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.78 59.0 5.87e-01 79.2% 97.1%
4030626 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.78 61.0 5.98e-01 83.2% 99.1%
3482572 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.78 61.0 6.02e-01 82.2% 99.0%
3627284 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.77 58.0 5.76e-01 78.2% 97.1%
4952750 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.77 63.0 6.23e-01 85.1% 99.0%
3247697 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.77 59.0 6.21e-01 79.2% 96.7%
3602546 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.77 61.0 6.14e-01 84.2% 96.1%
3581051 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.77 59.0 6.27e-01 80.2% 97.8%
3588078 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.76 61.0 6.42e-01 83.2% 100.0%
4027296 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.76 59.0 5.86e-01 81.2% 90.5%
3602395 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.76 61.0 6.53e-01 84.2% 95.5%
3709183 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.74 57.0 5.55e-01 81.2% 90.0%
3510623 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.74 56.0 5.15e-01 80.2% 76.7%
4030627 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.73 56.0 5.80e-01 81.2% 100.0%
4008725 872.3.1.4 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › DUF4156 0.72 60.0 6.32e-01 86.1% 100.0%
2806362 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.67 59.0 4.32e-01 96.0% 86.0%
5014544 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.64 51.0 4.58e-01 92.1% 60.7%
3499425 304.18.1.1 ↗ a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.62 43.0 4.20e-01 70.3% 73.4%
3110786 2485.3.1.14 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.61 53.0 3.66e-01 95.0% 84.9%
3697122 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 39.0 3.87e-01 76.2% 65.5%
6933 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.57 45.0 3.85e-01 85.1% 84.1%
4008366 812.1.1.0 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.57 38.0 3.99e-01 74.3% 76.7%
1144136 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 41.0 3.69e-01 77.2% 54.7%
3298960 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 37.0 4.24e-01 70.3% 95.7%
3240622 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.56 45.0 3.74e-01 89.1% 79.8%
3794644 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.55 40.0 3.68e-01 98.0% 57.0%
3802659 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.55 43.0 4.26e-01 100.0% 80.0%
3512571 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.54 41.0 3.77e-01 80.2% 87.3%
4026343 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.54 40.0 4.18e-01 100.0% 84.2%
3596783 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.54 41.0 3.98e-01 100.0% 72.2%
3696551 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 48.0 3.47e-01 100.0% 54.6%
3235186 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.54 41.0 4.03e-01 81.2% 89.9%
3605491 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.53 41.0 3.92e-01 100.0% 69.2%
3211894 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.94e-01 99.0% 77.0%
4138489 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.53 38.0 3.75e-01 99.0% 69.1%
3798602 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.53 43.0 3.45e-01 89.1% 70.7%
5001766 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.53 46.0 3.62e-01 99.0% 53.1%
4291659 304.124.1.8 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 0.52 47.0 4.20e-01 99.0% 89.3%
169085 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 44.0 3.56e-01 100.0% 47.7%
3781854 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.52 40.0 3.53e-01 83.2% 86.3%
1725 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 38.0 3.76e-01 98.0% 72.9%
3557043 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.47e-01 98.0% 59.2%
4614530 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.51 38.0 3.64e-01 99.0% 67.5%